Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 8.3e-210 733.4 361 100.0
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 1.2e-205 719.5 361 98.1
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 7.4e-174 614.0 361 83.4
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 9.3e-169 597.0 360 80.8
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.7e-165 585.1 376 78.7
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.8e-164 582.8 348 81.6
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 3.3e-142 508.8 363 70.2
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.4e-140 503.4 362 69.6
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.3e-138 496.9 362 69.3
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 7.5e-134 481.1 358 67.3
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.4e-132 476.9 358 66.5
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.6e-131 473.4 363 65.8
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 3.5e-131 472.2 359 65.2
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 3.5e-131 472.2 361 65.4
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 5.0e-130 468.4 364 64.6
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 6.5e-130 468.0 363 66.9
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 8.5e-130 467.6 364 64.3
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.5e-129 466.8 362 64.9
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 4.0e-127 458.8 376 63.0
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.8e-127 458.0 363 64.2
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.5e-126 456.8 361 65.4
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 4.4e-126 455.3 360 64.2
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 9.8e-126 454.1 362 64.1
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 2.2e-125 453.0 365 64.1
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 3.7e-125 452.2 365 64.4
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.7e-125 452.2 365 64.4
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 4.9e-125 451.8 363 63.4
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.1e-124 450.7 362 63.5
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.4e-124 450.3 368 62.2
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.8e-124 449.9 359 65.2
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 4.1e-124 448.7 361 62.9
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 5.4e-124 448.4 362 62.2
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 7.0e-124 448.0 368 62.0
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.6e-123 446.8 359 65.2
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 2.0e-123 446.4 358 64.8
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.0e-123 446.4 362 63.0
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 2.7e-123 446.0 327 67.9
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 3.5e-123 445.7 364 62.4
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 1.0e-122 444.1 363 63.6
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.3e-122 443.7 362 62.7
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.8e-122 442.2 357 62.7
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 6.6e-122 441.4 371 61.7
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 6.6e-122 441.4 381 60.9
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 1.5e-121 440.3 369 62.3
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 1.5e-121 440.3 359 61.0
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 3.3e-121 439.1 327 66.7
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 5.6e-121 438.3 371 62.3
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 2.1e-120 436.4 352 61.1
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 2.1e-120 436.4 427 55.3
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 4.7e-120 435.3 366 62.3
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 6.1e-120 434.9 361 62.9
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 4.0e-119 432.2 366 62.0
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.0e-118 429.9 366 61.7
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 3.4e-118 429.1 332 63.0
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.2e-117 426.4 361 61.2
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 4.9e-117 425.2 324 60.5
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 4.9e-117 425.2 327 65.7
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 3.2e-116 422.5 360 61.7
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 7.0e-116 421.4 350 62.3
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 1.2e-115 420.6 329 61.7
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 2.0e-115 419.9 351 62.1
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 5.9e-115 418.3 352 61.6
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.7e-114 416.8 358 57.8
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.3e-114 416.4 358 60.6
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.0e-114 416.0 328 63.1
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 8.6e-114 414.5 320 65.9
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 8.6e-114 414.5 328 63.7
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.1e-113 414.1 328 62.8
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.5e-113 413.7 357 59.4
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.9e-113 413.3 357 59.9
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 4.3e-113 412.1 359 61.3
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.1e-112 409.8 371 60.6
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 3.6e-112 409.1 358 60.9
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 4.7e-112 408.7 328 62.8
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 4.7e-112 408.7 329 62.6
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 4.7e-112 408.7 358 59.2
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 4.7e-112 408.7 370 57.8
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.0e-111 407.5 342 60.5
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.8e-111 406.8 358 59.8
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.8e-111 406.8 358 58.9
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.2e-110 404.1 361 58.2
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.2e-110 404.1 354 59.0
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 3.4e-110 402.5 365 58.9
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 5.8e-110 401.7 342 60.5
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.7e-109 400.2 358 57.5
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.4e-108 397.1 358 57.8
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.2e-108 396.0 358 57.8
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 3.2e-108 396.0 361 57.3
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.6e-107 393.7 357 58.0
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.5e-107 392.5 322 58.4
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 4.6e-107 392.1 332 62.0
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 5.0e-106 388.7 363 54.5
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.1e-105 387.5 430 50.0
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 8.1e-104 381.3 332 59.9
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 8.1e-104 381.3 361 56.5
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 2.3e-103 379.8 324 63.0
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 3.1e-103 379.4 368 56.8
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 5.2e-103 378.6 322 62.4
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.2e-103 378.6 350 59.7
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 7.5e-102 374.8 325 58.8
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.7e-101 372.5 268 63.8
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 2.4e-100 369.8 359 54.9
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 7.1e-100 368.2 358 53.6
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 3.5e-99 365.9 325 60.3
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 7.8e-99 364.8 325 59.1
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.7e-98 363.6 354 54.0
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 3.9e-98 362.5 357 53.8
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 5.1e-98 362.1 359 54.0
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 5.1e-98 362.1 355 54.6
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.1e-98 362.1 335 55.2
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 1.5e-97 360.5 299 61.2
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 5.6e-97 358.6 345 54.5
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 7.3e-97 358.2 326 58.3
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.7e-96 355.5 364 53.6
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 3.1e-95 352.8 355 54.4
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 2.6e-94 349.7 348 54.6
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 3.4e-94 349.4 345 54.8
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.2e-92 342.8 284 58.1
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.2e-91 340.9 319 57.7
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 6.0e-91 338.6 277 59.2
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 7.8e-91 338.2 352 46.9
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.3e-90 337.4 296 59.5
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 1.3e-90 337.4 411 45.7
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.6e-88 329.3 225 66.7
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 2.4e-87 326.6 274 58.8
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.2e-87 325.5 286 59.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 2.2e-85 320.1 327 46.8
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 2.9e-85 319.7 360 48.1
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 3.8e-85 319.3 346 52.9
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 4.9e-85 318.9 276 56.9
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.1e-84 317.8 341 51.3
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.2e-84 315.8 296 55.4
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 4.6e-83 312.4 358 49.4
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 7.8e-83 311.6 227 62.1
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 3.9e-82 309.3 316 50.9
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.3e-80 304.3 357 49.0
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.6e-80 303.9 332 48.8
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.4e-76 290.8 358 43.9
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.1e-75 287.0 333 49.5
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-73 280.4 333 49.2
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 3.3e-73 279.6 330 48.2
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 9.6e-73 278.1 331 48.3
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 2.1e-72 276.9 333 49.5
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 3.6e-72 276.2 330 49.4
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.8e-71 273.9 341 47.8
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 5.3e-71 272.3 334 49.7
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 5.3e-71 272.3 214 56.5
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 3.4e-70 269.6 329 47.7
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 4.5e-70 269.2 332 48.2
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.3e-69 267.7 328 45.4
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.7e-69 267.3 298 49.0
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 3.8e-69 266.2 334 49.1
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.2e-67 261.2 328 46.3
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 2.5e-65 253.4 335 46.9
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 4.8e-64 249.2 335 45.4
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 2.4e-55 220.3 220 45.0
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.9e-55 218.8 273 45.4
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.0e-53 214.9 326 41.1
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 6.5e-53 212.2 330 40.0
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.9e-52 210.7 319 42.9
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 6.1e-51 205.7 373 38.1
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 2.9e-45 186.8 109 78.9
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.8e-42 177.6 110 73.6
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.0e-37 161.8 93 74.2
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 4.1e-15 86.7 102 52.0
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 9.1e-15 85.5 119 34.5
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.5e-12 78.2 47 70.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.5e-12 77.4 48 68.8
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.8e-07 61.2 43 69.8


User provided reference genes

Program Settings