Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 7.2e-74 280.4 135 100.0
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 3.0e-27 125.6 70 80.0
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 9.6e-26 120.6 76 75.0
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 9.6e-26 120.6 72 77.8
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 1.3e-25 120.2 70 78.6
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 3.6e-25 118.6 72 76.4
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.6e-25 118.6 72 76.4
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.6e-25 118.6 72 76.4
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-24 116.7 70 75.7
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 9.0e-24 114.0 82 68.3
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 4.5e-23 111.7 66 77.3
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.1e-21 107.1 72 70.8
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 3.2e-21 105.5 95 54.7
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 4.2e-21 105.1 70 74.3
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.2e-20 103.6 70 68.6
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 6.0e-20 101.3 61 77.0
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 7.9e-20 100.9 105 49.5
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 3.0e-19 99.0 71 67.6
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 3.9e-19 98.6 70 65.7
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 3.9e-19 98.6 70 65.7
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 3.9e-19 98.6 70 65.7
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 3.9e-19 98.6 70 65.7
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 3.9e-19 98.6 70 65.7
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 5.1e-19 98.2 70 65.7
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 5.1e-19 98.2 70 65.7
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 5.1e-19 98.2 70 64.3
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 6.7e-19 97.8 70 64.3
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 6.7e-19 97.8 70 64.3
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 6.7e-19 97.8 70 64.3
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 6.7e-19 97.8 70 64.3
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.7e-19 97.4 70 64.3
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 8.7e-19 97.4 70 64.3
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-18 96.7 105 47.6
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-18 96.7 105 47.6
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-18 96.7 105 47.6
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-18 96.7 105 47.6
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-18 96.7 105 47.6
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 1.5e-18 96.7 105 47.6
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.9e-18 96.3 70 64.3
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.9e-18 96.3 70 64.3
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.9e-18 96.3 70 64.3
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.9e-18 96.3 70 64.3
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.9e-18 96.3 70 64.3
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.9e-18 96.3 70 64.3
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 2.5e-18 95.9 70 64.3
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 3.3e-18 95.5 70 62.9
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 4.3e-18 95.1 71 64.8
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 4.3e-18 95.1 70 62.9
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 4.3e-18 95.1 70 62.9
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 1.6e-17 93.2 71 63.4
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.6e-17 93.2 70 61.4
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.6e-17 93.2 70 61.4
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 1.1e-16 90.5 71 60.6
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.1e-16 90.5 106 46.2
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.1e-16 90.5 106 46.2
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 1.4e-16 90.1 70 65.7
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 1.8e-16 89.7 56 75.0
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 2.4e-16 89.4 61 68.9
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 2.4e-16 89.4 55 74.5
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 5.3e-16 88.2 64 57.8
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 5.3e-16 88.2 70 58.6
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 9.0e-16 87.4 51 78.4
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 9.0e-16 87.4 68 61.8
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 2.0e-15 86.3 61 67.2
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 2.0e-15 86.3 61 67.2
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 2.0e-15 86.3 61 67.2
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 3.4e-15 85.5 50 78.0
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 7.6e-15 84.3 59 67.8
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 1.3e-14 83.6 70 55.7
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 7.1e-13 77.8 56 64.3
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 2.1e-12 76.3 70 51.4
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 2.1e-12 76.3 70 51.4
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 1.3e-11 73.6 49 65.3
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-11 73.6 54 63.0
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 8.7e-11 70.9 48 66.7
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.5e-10 70.1 57 61.4
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 3.3e-10 68.9 47 66.0
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.3e-10 68.9 70 48.6
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 3.3e-10 68.9 38 78.9
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.6e-09 66.6 49 63.3
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 4.8e-09 65.1 36 80.6
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 4.8e-09 65.1 70 45.7
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 4.8e-09 65.1 70 44.3
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 4.8e-09 65.1 36 80.6
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 4.8e-09 65.1 36 80.6
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 4.8e-09 65.1 36 80.6
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 4.8e-09 65.1 106 38.7
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 8.2e-09 64.3 82 50.0
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 8.2e-09 64.3 70 48.6
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 1.1e-08 63.9 50 62.0
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 1.5e-07 60.1 70 47.1
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.5e-07 60.1 32 78.1
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 4.5e-07 58.5 32 78.1
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 5.8e-07 58.2 33 72.7
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 2.2e-06 56.2 44 63.6
Atru.chr9.2056 Acer truncatum HOM05D001098 ORTHO05D002527 3.8e-06 55.5 31 77.4


User provided reference genes

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