Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 5.8e-58 227.3 107 100.0
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 6.4e-57 223.8 107 98.1
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 3.2e-56 221.5 107 98.1
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 6.6e-54 213.8 107 93.5
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 5.6e-45 184.1 101 86.1
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 2.6e-42 175.3 106 76.4
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 2.9e-41 171.8 109 76.1
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 1.4e-40 169.5 103 77.7
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 2.4e-40 168.7 103 77.7
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 5.4e-40 167.5 104 74.0
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 5.4e-40 167.5 103 74.8
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.2e-39 166.4 104 77.9
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 1.6e-39 166.0 102 72.5
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 1.6e-39 166.0 103 72.8
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 4.6e-39 164.5 102 75.5
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 1.0e-38 163.3 106 69.8
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 1.7e-38 162.5 93 77.4
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 2.3e-38 162.2 104 70.2
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 2.3e-38 162.2 110 66.4
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 2.3e-38 162.2 105 72.4
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 2.3e-38 162.2 93 77.4
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 3.0e-38 161.8 102 72.5
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 3.0e-38 161.8 112 66.1
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 3.9e-38 161.4 110 67.3
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 3.9e-38 161.4 104 70.2
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 6.6e-38 160.6 107 69.2
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 8.6e-38 160.2 98 71.4
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 2.5e-37 158.7 105 70.5
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 3.3e-37 158.3 93 77.4
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 3.3e-37 158.3 93 76.3
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 4.3e-37 157.9 104 70.2
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 4.3e-37 157.9 105 69.5
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 4.3e-37 157.9 105 68.6
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 7.3e-37 157.1 105 70.5
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 1.6e-36 156.0 123 61.8
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 2.8e-36 155.2 103 68.9
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 3.6e-36 154.8 105 65.7
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 3.6e-36 154.8 98 70.4
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 4.7e-36 154.5 91 72.5
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 4.7e-36 154.5 107 65.4
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 4.7e-36 154.5 107 66.4
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 6.2e-36 154.1 104 68.3
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 1.8e-35 152.5 105 63.8
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 5.2e-35 151.0 101 65.3
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 5.2e-35 151.0 104 67.3
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 1.2e-34 149.8 102 66.7
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 1.5e-34 149.4 101 65.3
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 2.6e-34 148.7 77 90.9
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 3.4e-34 148.3 104 66.3
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 1.3e-33 146.4 104 62.5
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 1.7e-33 146.0 104 65.4
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 3.8e-33 144.8 93 65.6
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 4.9e-33 144.4 101 66.3
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 4.9e-33 144.4 101 66.3
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 6.4e-33 144.1 102 64.7
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 8.4e-33 143.7 107 63.6
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 8.4e-33 143.7 77 85.7
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 1.4e-32 142.9 110 60.9
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 1.9e-32 142.5 77 85.7
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 5.4e-32 141.0 110 64.5
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 9.3e-32 140.2 104 60.6
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 1.6e-31 139.4 81 81.5
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 2.1e-31 139.0 101 63.4
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.5e-31 138.3 101 64.4
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.5e-31 138.3 101 64.4
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 3.5e-31 138.3 103 62.1
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 3.5e-31 138.3 89 68.5
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 6.0e-31 137.5 101 60.4
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.0e-30 136.7 101 63.4
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.0e-30 136.7 100 60.0
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.0e-30 136.7 100 60.0
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 1.7e-30 136.0 94 66.0
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 3.9e-30 134.8 102 59.8
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 6.6e-30 134.0 102 59.8
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 6.6e-30 134.0 89 67.4
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.1e-29 133.3 101 63.4
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 1.5e-29 132.9 105 60.0
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 1.9e-29 132.5 105 59.0
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 2.5e-29 132.1 77 72.7
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 3.3e-29 131.7 105 58.1
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 4.3e-29 131.3 75 82.7
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 4.3e-29 131.3 139 48.9
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 5.6e-29 131.0 105 59.0
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 5.6e-29 131.0 105 54.3
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 1.3e-28 129.8 105 59.0
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 1.3e-28 129.8 105 57.1
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 1.3e-28 129.8 90 64.4
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-28 129.4 105 60.0
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 3.6e-28 128.3 105 59.0
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 4.8e-28 127.9 94 60.6
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 6.2e-28 127.5 100 56.0
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.1e-27 126.7 88 65.9
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 3.1e-27 125.2 76 73.7
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 4.0e-27 124.8 94 59.6
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 5.3e-27 124.4 119 50.4
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 9.0e-27 123.6 105 58.1
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 1.2e-26 123.2 119 49.6
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 1.2e-26 123.2 119 49.6
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 1.5e-26 122.9 124 50.8
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 1.5e-26 122.9 100 60.0
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 7.6e-26 120.6 94 56.4
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 9.9e-26 120.2 75 69.3
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 2.2e-25 119.0 111 53.2
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 2.2e-25 119.0 85 58.8
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 2.9e-25 118.6 74 71.6
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 8.4e-25 117.1 127 48.0
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 1.1e-24 116.7 99 50.5
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 1.9e-24 115.9 111 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 2.1e-23 112.5 95 49.5
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 2.1e-23 112.5 71 67.6
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 1.0e-22 110.2 69 71.0
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 3.9e-22 108.2 76 60.5
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 3.9e-22 108.2 69 72.5
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 4.3e-21 104.8 71 63.4
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.6e-20 102.8 71 71.8
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 6.2e-20 100.9 70 65.7
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 6.2e-20 100.9 69 65.2
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 2.0e-18 95.9 78 56.4
Thhalv10026551m.g Eutrema salsugineum HOM05D006227 ORTHO05D007714 3.4e-18 95.1 77 55.8
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 1.3e-17 93.2 74 58.1
BolC1t02011H Brassica oleracea HOM05D006227 ORTHO05D007714 3.2e-16 88.6 119 39.5
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 2.7e-15 85.5 90 42.2
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 3.9e-14 81.6 53 69.8
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 2.1e-12 75.9 40 82.5
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 3.1e-11 72.0 57 57.9
Manes.04G009950 Manihot esculenta HOM05D006227 ORTHO05D007714 1.9e-08 62.8 37 70.3
RcHm_v2.0_Chr4g0411551 Rosa chinensis HOM05D000001 ORTHO05D000003 5.1e-06 54.7 30 80.0


User provided reference genes

Program Settings