Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g086830.4 Solanum lycopersicum HOM05D007237 ORTHO05D008854 1.0e-54 216.5 106 100.0
Sopen01g033840 Solanum pennellii HOM05D007237 ORTHO05D008854 2.5e-53 211.8 106 97.2
CAN.G1393.1 Capsicum annuum HOM05D007237 ORTHO05D008854 4.7e-44 181.0 102 82.4
Peaxi162Scf00428g01024 Petunia axillaris HOM05D007237 ORTHO05D008854 1.4e-40 169.5 107 73.8
Migut.O00928 Erythranthe guttata HOM05D007237 ORTHO05D008854 8.6e-38 160.2 102 71.6
MSTRG.28082 Avicennia marina HOM05D007237 ORTHO05D008854 1.1e-37 159.8 104 73.1
Oeu036184.1 Olea europaea HOM05D007237 ORTHO05D008854 4.3e-37 157.9 106 66.0
SalBow4G0796 Salvia bowleyana HOM05D007237 ORTHO05D008854 8.0e-36 153.7 100 71.0
Manes.10G147700 Manihot esculenta HOM05D007237 ORTHO05D008854 1.4e-35 152.9 103 68.0
ECA234G1833 Erigeron canadensis HOM05D007237 ORTHO05D008854 4.0e-35 151.4 100 68.0
Lsat_1_v5_gn_4_46201 Lactuca sativa HOM05D007237 ORTHO05D008854 5.2e-35 151.0 99 67.7
Thecc.01G414400 Theobroma cacao HOM05D007237 ORTHO05D008854 5.2e-35 151.0 104 68.3
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 6.8e-35 150.6 88 77.3
Eucgr.J01258 Eucalyptus grandis HOM05D007237 ORTHO05D008854 6.8e-35 150.6 104 69.2
Manes.07G003400 Manihot esculenta HOM05D007237 ORTHO05D008854 6.8e-35 150.6 99 66.7
Atru.chr11.2633 Acer truncatum HOM05D007237 ORTHO05D008854 8.9e-35 150.2 103 64.1
HanXRQChr17g0563491 Helianthus annuus HOM05D007237 ORTHO05D008854 8.9e-35 150.2 103 60.2
Oeu036183.1 Olea europaea HOM05D000288 ORTHO05D008854 8.9e-35 150.2 99 66.7
Duzib138G0953 Durio zibethinus HOM05D007237 ORTHO05D008854 1.5e-34 149.4 104 67.3
Dinv43468 Davidia involucrata HOM05D007237 ORTHO05D008854 3.4e-34 148.3 104 62.5
HanXRQChr16g0519611 Helianthus annuus HOM05D007237 ORTHO05D008854 3.4e-34 148.3 103 65.0
Potri.001G271000 Populus trichocarpa HOM05D007237 ORTHO05D008854 3.4e-34 148.3 102 65.7
HanXRQChr11g0330541 Helianthus annuus HOM05D007237 ORTHO05D008854 4.4e-34 147.9 100 65.0
Hma1.2p1_0845F.1_g227580 Hydrangea macrophylla HOM05D007237 ORTHO05D008854 4.4e-34 147.9 97 70.1
Gorai.008G105400 Gossypium raimondii HOM05D007237 ORTHO05D008854 5.7e-34 147.5 104 66.3
SGA_v2.0_scaffold95G28787 Striga asiatica HOM05D000288 ORTHO05D000173 9.8e-34 146.7 97 68.0
Sc11g0009340 Simmondsia chinensis HOM05D007237 ORTHO05D008854 1.3e-33 146.4 100 68.0
QL04p004894 Quercus lobata HOM05D007237 ORTHO05D008854 2.2e-33 145.6 96 67.7
TWI09G0768 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.2e-33 145.6 104 63.5
TWI53G0305 Tripterygium wilfordii HOM05D007237 ORTHO05D008854 2.2e-33 145.6 101 66.3
CSS0046270 Camellia sinensis var. sinensis HOM05D007237 ORTHO05D008854 2.9e-33 145.2 100 66.0
CiPaw.13G002300 Carya illinoinensis HOM05D007237 ORTHO05D008854 2.9e-33 145.2 104 66.3
SGA_v2.0_scaffold4G02250 Striga asiatica HOM05D000288 ORTHO05D000173 2.9e-33 145.2 104 66.3
CANSAT21G0694 Cannabis sativa HOM05D007237 ORTHO05D008854 3.7e-33 144.8 75 85.3
Gohir.A12G094200 Gossypium hirsutum HOM05D007237 ORTHO05D008854 3.7e-33 144.8 87 73.6
Prupe.2G008100 Prunus persica HOM05D007237 ORTHO05D008854 4.9e-33 144.4 102 63.7
Lalb_Chr03g0033911 Lupinus albus HOM05D007237 ORTHO05D008854 8.3e-33 143.7 100 62.0
Sabra16G0166400 Salix brachista HOM05D007237 ORTHO05D008854 8.3e-33 143.7 102 64.7
Ciclev10033078m.g Citrus clementina HOM05D007237 ORTHO05D008854 1.1e-32 143.3 99 64.6
Cc02_g27480 Coffea canephora HOM05D007237 ORTHO05D008854 1.1e-32 143.3 95 67.4
FvH4_7g00620 Fragaria vesca HOM05D007237 ORTHO05D008854 1.4e-32 142.9 100 62.0
Glyma.08G152200 Glycine max HOM05D007237 ORTHO05D008854 1.8e-32 142.5 96 68.8
MD07G1005700 Malus domestica HOM05D007237 ORTHO05D008854 2.4e-32 142.1 98 67.3
Psat5g205480 Pisum sativum HOM05D007237 ORTHO05D008854 2.4e-32 142.1 101 64.4
Glyma.15G271600 Glycine max HOM05D007237 ORTHO05D008854 4.1e-32 141.4 76 78.9
MD02G1316200 Malus domestica HOM05D007237 ORTHO05D008854 4.1e-32 141.4 98 64.3
Gohir.D08G166900 Gossypium hirsutum HOM05D007237 ORTHO05D008854 9.2e-32 140.2 104 62.5
Gorai.004G174300 Gossypium raimondii HOM05D007237 ORTHO05D008854 9.2e-32 140.2 104 62.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.0e-31 139.0 98 62.2
Gohir.A08G146000 Gossypium hirsutum HOM05D007237 ORTHO05D008854 2.7e-31 138.7 104 62.5
RcHm_v2.0_Chr1g0314811 Rosa chinensis HOM05D007237 ORTHO05D008854 2.7e-31 138.7 105 60.0
arahy.Tifrunner.gnm1.ann1.1X74KR Arachis hypogaea HOM05D007237 ORTHO05D008854 3.5e-31 138.3 91 67.0
arahy.Tifrunner.gnm1.ann1.CQ9Q2Z Arachis hypogaea HOM05D007237 ORTHO05D008854 3.5e-31 138.3 91 68.1
arahy.Tifrunner.gnm1.ann1.PP9VDR Arachis hypogaea HOM05D007237 ORTHO05D008854 3.5e-31 138.3 91 68.1
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.0e-30 136.7 85 67.1
PGR044G2203 Punica granatum HOM05D007237 ORTHO05D008854 2.3e-30 135.6 99 59.6
Ah.12g061430 Amaranthus hybridus HOM05D000016 ORTHO05D000433 3.0e-30 135.2 99 60.6
ATR0605G218 Amborella trichopoda HOM05D007237 ORTHO05D008854 5.0e-30 134.4 98 60.2
vmacro13649 Vaccinium macrocarpon HOM05D000102 ORTHO05D000138 5.0e-30 134.4 82 69.5
Lalb_Chr20g0108101 Lupinus albus HOM05D007237 ORTHO05D008854 6.6e-30 134.0 100 60.0
Aqoxy2G00108 Aquilegia oxysepala HOM05D007237 ORTHO05D008854 8.6e-30 133.7 101 58.4
Lj3g0027771 Lotus japonicus HOM05D007237 ORTHO05D008854 1.1e-29 133.3 97 62.9
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 1.5e-29 132.9 97 63.9
PSO017G6688 Papaver somniferum HOM05D007237 ORTHO05D008854 2.5e-29 132.1 94 62.8
TPR.G12234 Trifolium pratense HOM05D007237 ORTHO05D008854 2.5e-29 132.1 97 61.9
Medtr3g027590 Medicago truncatula HOM05D007237 ORTHO05D008854 3.3e-29 131.7 77 70.1
Phvul.005G037300 Phaseolus vulgaris HOM05D007237 ORTHO05D008854 7.3e-29 130.6 99 57.6
Prupe.2G008300 Prunus persica HOM05D007237 ORTHO05D008854 7.3e-29 130.6 101 59.4
Actinidia31685 Actinidia chinensis HOM05D007237 ORTHO05D008854 1.6e-28 129.4 102 59.8
MBI04_g14266_MAGBIO Magnolia biondii HOM05D007237 ORTHO05D008854 1.6e-28 129.4 92 60.9
Carub.0003s0700 Capsella rubella HOM05D007237 ORTHO05D008854 2.8e-28 128.6 98 58.2
CARHR082100 Cardamine hirsuta HOM05D007237 ORTHO05D008854 2.8e-28 128.6 98 56.1
AL3G18770 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 3.6e-28 128.3 93 60.2
AT3G07450 Arabidopsis thaliana HOM05D007237 ORTHO05D008854 4.7e-28 127.9 99 57.6
Ah.12g052640 Amaranthus hybridus HOM05D000491 ORTHO05D008854 1.4e-27 126.3 84 64.3
Sp5g10150 Schrenkiella parvula HOM05D007237 ORTHO05D008854 1.8e-27 125.9 107 54.2
A03p35260 Brassica napus HOM05D007237 ORTHO05D008854 3.1e-27 125.2 99 55.6
Thhalv10022125m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 3.1e-27 125.2 79 68.4
THA.LOC104825138 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 3.1e-27 125.2 75 68.0
BraA03t12704Z Brassica rapa HOM05D007237 ORTHO05D008854 4.0e-27 124.8 99 55.6
C03p42880 Brassica napus HOM05D007237 ORTHO05D008854 5.2e-27 124.4 99 55.6
BolC3t16556H Brassica oleracea HOM05D007237 ORTHO05D008854 5.2e-27 124.4 99 55.6
CARHR161870 Cardamine hirsuta HOM05D007237 ORTHO05D008854 5.2e-27 124.4 75 66.7
Thhalv10010991m.g Eutrema salsugineum HOM05D007237 ORTHO05D008854 5.2e-27 124.4 75 66.7
EL10Ac2g04307 Beta vulgaris HOM05D007237 ORTHO05D008854 6.8e-27 124.0 90 58.9
BcaB03g14701 Brassica carinata HOM05D007237 ORTHO05D008854 6.8e-27 124.0 100 56.0
C05p59860 Brassica napus HOM05D007237 ORTHO05D008854 8.9e-27 123.6 94 54.3
BolC5t34640H Brassica oleracea HOM05D007237 ORTHO05D008854 8.9e-27 123.6 94 54.3
Carub.0005s1847 Capsella rubella HOM05D007237 ORTHO05D008854 8.9e-27 123.6 75 65.3
Aa31LG10G7220 Aethionema arabicum HOM05D007237 ORTHO05D008854 1.2e-26 123.2 75 65.3
AL5G32700 Arabidopsis lyrata HOM05D007237 ORTHO05D008854 1.2e-26 123.2 75 65.3
A04p07230 Brassica napus HOM05D007237 ORTHO05D008854 1.2e-26 123.2 89 59.6
BcaC06g33382 Brassica carinata HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 65.3
A03p48720 Brassica napus HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 65.3
A09p45190 Brassica napus HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 64.0
C07p46810 Brassica napus HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 65.3
BolC7t45198H Brassica oleracea HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 65.3
BolC8t50357H Brassica oleracea HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 64.0
BraA03t13972Z Brassica rapa HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 65.3
BraA09t39982Z Brassica rapa HOM05D007237 ORTHO05D008854 1.5e-26 122.9 75 64.0
BcaC01g04282 Brassica carinata HOM05D007237 ORTHO05D008854 2.0e-26 122.5 93 58.1
A05p40750 Brassica napus HOM05D007237 ORTHO05D008854 2.6e-26 122.1 94 56.4
BraA05t22806Z Brassica rapa HOM05D007237 ORTHO05D008854 2.6e-26 122.1 95 58.9
BcaC02g09277 Brassica carinata HOM05D007237 ORTHO05D008854 3.4e-26 121.7 75 68.0
C04p40790 Brassica napus HOM05D007237 ORTHO05D008854 3.4e-26 121.7 75 68.0
BcaNung06095 Brassica carinata HOM05D007237 ORTHO05D008854 7.5e-26 120.6 75 62.7
C08p27400 Brassica napus HOM05D007237 ORTHO05D008854 7.5e-26 120.6 75 62.7
Sed0015658 Sechium edule HOM05D007237 ORTHO05D008854 9.8e-26 120.2 95 58.9
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.7e-25 118.2 100 60.0
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 3.7e-25 118.2 100 60.0
THA.LOC104820127 Tarenaya hassleriana HOM05D007237 ORTHO05D008854 4.9e-25 117.9 80 65.0
Rhsim07G0053900 Rhododendron simsii HOM05D000102 ORTHO05D000138 6.6e-22 107.5 59 74.6
BcaC05g29536 Brassica carinata HOM05D007237 ORTHO05D008854 1.9e-21 105.9 85 55.3
CsaV3_7G031300 Cucumis sativus L. HOM05D007237 ORTHO05D008854 9.5e-21 103.6 74 56.8
Haze_03241 Corylus avellana HOM05D007237 ORTHO05D008854 1.6e-20 102.8 79 59.5
CDE10G0734 Ceratophyllum demersum HOM05D007237 ORTHO05D008854 2.1e-20 102.4 77 54.5
ClCG09G004370 Citrullus lanatus HOM05D007237 ORTHO05D008854 2.1e-20 102.4 74 55.4
MELO3C023529.2 Cucumis melo HOM05D007237 ORTHO05D008854 8.1e-20 100.5 98 43.9
SHI04057 Sapria himalayana HOM05D007237 ORTHO05D008854 6.4e-17 90.9 107 36.4
Sed0001876 Sechium edule HOM05D007237 ORTHO05D008854 9.2e-16 87.0 98 39.8
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.3e-06 56.6 94 31.9
Haze_11072 Corylus avellana HOM05D001848 ORTHO05D001295 3.9e-06 55.1 96 33.3
Cfa008554 Carpinus fangiana HOM05D001848 ORTHO05D001295 6.6e-06 54.3 95 31.6


User provided reference genes

Program Settings