Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 1.9e-212 742.3 377 100.0
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 2.5e-212 741.9 377 99.7
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.9e-204 715.7 377 97.1
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 4.6e-195 684.5 376 93.6
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 8.2e-192 673.7 377 91.0
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.5e-190 669.5 378 91.0
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 2.5e-172 609.0 379 84.4
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 2.1e-163 579.3 371 80.9
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 3.0e-162 575.5 371 80.3
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 3.7e-160 568.5 370 78.9
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 3.1e-159 565.5 372 77.2
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 5.9e-158 561.2 369 77.8
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 1.1e-156 557.0 374 77.8
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 1.9e-156 556.2 375 76.5
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.2e-155 553.5 372 75.5
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 1.4e-154 550.1 369 77.5
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 4.0e-154 548.5 374 76.5
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 5.2e-154 548.1 364 76.9
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 1.2e-153 547.0 371 77.9
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 2.0e-153 546.2 369 77.0
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 7.5e-153 544.3 375 74.4
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 3.7e-152 542.0 365 77.3
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 4.9e-152 541.6 372 76.1
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 1.1e-151 540.4 336 81.5
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.4e-151 540.0 373 75.3
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 7.0e-151 537.7 348 79.3
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 1.2e-150 537.0 364 76.1
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 3.5e-150 535.4 385 73.0
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 4.6e-150 535.0 375 73.3
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 4.6e-150 535.0 377 75.1
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 5.9e-150 534.6 372 74.7
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 2.3e-149 532.7 384 73.7
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 3.0e-149 532.3 382 74.1
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 6.6e-149 531.2 335 80.9
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 1.1e-148 530.4 373 75.9
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 1.1e-148 530.4 365 75.3
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 1.1e-148 530.4 375 72.5
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.1e-148 530.4 366 75.7
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 5.6e-148 528.1 337 79.8
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 5.6e-148 528.1 374 75.1
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 7.3e-148 527.7 406 69.2
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 2.1e-147 526.2 339 79.4
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 3.6e-147 525.4 382 74.3
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 3.6e-147 525.4 377 74.0
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 4.7e-147 525.0 373 75.6
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.0e-146 523.9 335 80.0
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 1.0e-146 523.9 338 79.0
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 1.4e-146 523.5 374 74.9
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 6.8e-146 521.2 335 79.1
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 1.5e-145 520.0 347 77.2
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 2.0e-145 519.6 396 71.5
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 2.6e-145 519.2 373 74.0
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 2.6e-145 519.2 373 74.0
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 5.8e-145 518.1 373 74.3
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 7.5e-145 517.7 378 74.1
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 9.8e-145 517.3 325 81.2
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.3e-144 516.9 372 73.7
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 1.3e-144 516.9 376 73.7
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 2.2e-144 516.2 371 73.9
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 2.2e-144 516.2 371 73.9
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 1.1e-143 513.8 374 73.5
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 1.4e-143 513.5 384 71.6
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 1.2e-142 510.4 380 72.9
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.0e-141 507.3 334 78.1
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.3e-141 506.9 384 70.8
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.3e-141 506.9 365 74.0
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.7e-141 506.5 370 71.1
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 2.3e-141 506.1 381 72.2
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 5.0e-141 505.0 338 76.9
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 8.6e-141 504.2 369 73.2
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 1.9e-140 503.1 325 78.8
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 3.3e-140 502.3 369 71.3
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.3e-140 502.3 367 73.3
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 9.5e-140 500.7 343 76.7
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 1.6e-139 500.0 337 78.3
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 2.8e-139 499.2 372 71.8
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 2.8e-139 499.2 322 79.8
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 3.6e-139 498.8 383 70.2
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 1.2e-137 493.8 333 77.5
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 1.5e-137 493.4 387 69.5
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.5e-137 493.4 330 77.0
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 2.0e-137 493.0 370 71.9
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 3.4e-137 492.3 363 72.2
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 4.4e-137 491.9 386 68.9
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 7.5e-137 491.1 364 71.4
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 1.7e-136 490.0 344 75.0
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 3.2e-135 485.7 382 67.8
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 5.4e-135 485.0 349 72.5
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 5.4e-135 485.0 315 77.8
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 1.2e-134 483.8 375 69.3
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 1.3e-133 480.3 328 76.2
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.3e-133 479.6 334 73.4
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.1e-132 477.2 328 75.9
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 1.5e-132 476.9 370 68.9
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.1e-130 470.7 365 70.4
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 2.3e-130 469.5 323 75.5
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 5.2e-130 468.4 325 74.8
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 8.9e-130 467.6 279 84.9
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 1.5e-124 450.3 329 71.7
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 5.6e-124 448.4 287 80.8
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 1.3e-117 427.2 335 68.1
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 1.1e-114 417.5 287 73.9
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 6.9e-114 414.8 349 65.9
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 1.5e-113 413.7 276 74.6
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 1.3e-112 410.6 291 70.1
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 5.1e-109 398.7 332 64.2
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 4.8e-107 392.1 233 85.0
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 3.8e-104 382.5 282 67.7
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 1.3e-101 374.0 293 70.0
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.1e-99 366.7 292 64.7
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 6.3e-91 338.6 213 79.3
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 1.8e-85 320.5 281 60.1
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 3.3e-84 316.2 255 60.0
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 2.2e-80 303.5 237 67.5
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 8.5e-80 301.6 259 57.5
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.2e-79 299.3 242 67.4
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 5.5e-79 298.9 276 59.4
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 1.2e-78 297.7 205 75.6
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 5.7e-68 262.3 191 70.2
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 9.4e-63 245.0 186 68.8
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.6e-62 244.2 187 70.1
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 8.0e-62 241.9 158 79.1
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 1.5e-60 237.7 179 68.2
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 7.5e-60 235.3 179 67.6
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 4.8e-51 206.1 203 55.2
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 4.8e-51 206.1 120 85.0
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 8.5e-48 195.3 109 89.0
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 8.0e-46 188.7 137 73.7
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 3.0e-37 160.2 114 68.4
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 5.9e-33 146.0 249 36.5
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 1.8e-29 134.4 83 80.7
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 1.8e-29 134.4 238 34.9
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 2.4e-26 124.0 75 85.3
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 4.6e-25 119.8 189 44.4
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.5e-23 114.0 155 45.2
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 4.3e-23 113.2 168 40.5
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 2.1e-22 110.9 241 31.1
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 1.4e-21 108.2 111 56.8
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 7.1e-18 95.9 50 92.0
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.3e-16 90.9 73 60.3


User provided reference genes

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