Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 3685.2 1948 100.0
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 3586.2 1932 98.3
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 3254.5 1936 89.6
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 3196.0 1937 88.4
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 3155.2 1948 87.4
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 3030.0 1970 83.2
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 1998.4 1951 60.3
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 1988.8 1967 57.8
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 1960.3 1959 56.5
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 1951.8 1958 57.9
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 1951.8 1972 57.4
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 1949.9 1984 57.3
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 1943.3 1962 57.5
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 1940.2 1952 56.8
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 1934.5 1966 56.3
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 1897.9 1960 56.5
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1895.9 1901 57.3
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 1883.6 1971 55.1
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1883.6 1960 55.7
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 1863.2 1962 55.0
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 1862.4 1976 55.3
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 1860.5 1775 57.5
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 1858.6 1953 56.5
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1858.2 1967 55.6
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1845.5 1964 54.9
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 1845.1 1976 54.3
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1840.9 1953 55.2
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 1838.5 1963 55.1
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1836.6 1953 55.2
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1829.3 2026 53.6
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 1825.1 1990 53.4
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1800.8 1977 53.1
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 1795.8 1961 53.9
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1783.5 1972 52.4
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1780.4 1973 52.3
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1775.0 1885 55.2
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1764.2 1972 52.2
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 1758.0 1962 53.5
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1755.7 1888 55.0
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 1752.3 1969 52.9
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 1750.7 1961 53.3
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 1745.3 1962 52.6
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 1741.5 1961 52.1
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1741.1 1971 51.8
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 1724.1 1965 51.5
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1720.7 1979 52.6
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1718.7 1949 53.4
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1718.4 1974 51.7
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 1715.3 1966 52.0
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1707.6 1960 51.3
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1704.9 1785 53.6
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1704.1 1992 51.5
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1698.3 1967 50.9
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1687.2 1969 51.7
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1685.2 1946 51.0
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1684.5 1667 59.0
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1670.2 1982 50.7
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1664.8 1967 50.5
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1660.2 1764 52.9
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1652.9 1891 51.5
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1646.7 1676 55.7
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1594.7 1947 50.5
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1586.2 2037 48.0
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1577.8 1936 48.7
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1555.0 1943 49.2
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1508.0 1964 47.9
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1460.7 1954 45.6
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1417.9 1980 46.6
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1394.8 1756 47.8
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1372.5 1940 45.4
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1358.6 1963 44.4
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1295.0 1685 47.0
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1268.8 1699 46.5
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1263.4 1696 46.5
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1240.7 1563 49.1
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1216.4 1759 42.0
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1182.2 1320 50.2
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1144.0 1580 42.7
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 7.3e-284 981.9 2073 36.2
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 5.4e-279 965.7 1147 50.2
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 5.0e-277 959.1 1021 55.2
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 2.4e-271 940.3 1306 43.8
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 9.9e-265 918.3 909 55.7
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 2.3e-261 907.1 1117 50.9
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 1.9e-255 887.5 2044 33.8
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 2.4e-255 887.1 1022 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 7.1e-255 885.6 1718 34.3
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.2e-240 837.4 1370 37.7
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.6e-206 724.9 870 48.4
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 1.3e-195 688.7 1451 32.5
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 2.7e-190 671.0 739 52.5
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 3.5e-169 600.9 783 45.6
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 2.8e-150 538.1 396 69.7
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 3.7e-126 458.0 2492 24.9
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 1.3e-120 439.5 416 56.7
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 5.7e-111 407.5 561 50.6
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 9.0e-109 400.2 341 63.3
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 6.9e-101 374.0 297 64.3
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.2e-89 336.7 339 56.9
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 7.7e-84 317.4 288 58.0
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 3.5e-76 292.0 343 55.1
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 1.3e-75 290.0 158 98.1
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 1.1e-74 287.0 375 56.3
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 5.2e-72 278.1 306 52.6
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 2.9e-67 262.3 305 67.5
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 1.4e-56 226.9 377 40.3
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.6e-52 213.4 215 52.6
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 4.0e-48 198.7 163 73.0
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 3.4e-47 195.7 163 73.6
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 9.2e-45 187.6 189 55.0
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 9.2e-45 187.6 196 54.1
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 8.1e-41 174.5 134 65.7
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 1.5e-39 170.2 142 71.8
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.6e-33 150.2 333 46.2
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.1e-24 120.9 172 41.9
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 2.0e-23 116.7 219 37.9
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.6e-23 116.3 371 42.9
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 1.1e-21 110.9 161 43.5
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.4e-21 110.5 179 47.5
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 2.3e-19 103.2 85 63.5
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 9.0e-16 91.3 65 67.7
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 2.6e-15 89.7 134 41.8
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 6.0e-12 78.6 91 49.5
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 8.7e-11 74.7 162 33.3
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.8e-08 67.0 45 82.2
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 2.6e-07 63.2 44 77.3
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 2.9e-06 59.7 48 60.4
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 8.4e-06 58.2 48 64.6


User provided reference genes

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