Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 4.4e-250 867.5 426 100.0
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 6.4e-225 783.9 396 97.0
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.4e-208 728.8 420 86.9
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 5.4e-208 727.6 397 89.9
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 2.7e-207 725.3 395 89.9
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.3e-201 706.4 351 97.4
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 4.2e-192 674.9 425 81.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 3.1e-179 632.1 399 77.9
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 5.3e-179 631.3 414 74.6
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 5.5e-176 621.3 402 75.9
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.2e-175 620.2 398 76.4
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 7.9e-175 617.5 390 77.7
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.0e-174 617.1 396 76.3
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.3e-174 616.7 400 75.8
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 3.0e-174 615.5 401 76.1
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 3.9e-174 615.1 396 76.0
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.1e-173 613.6 399 74.7
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.3e-172 610.1 392 76.3
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.3e-172 610.1 390 75.9
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 3.7e-172 608.6 392 76.0
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.8e-172 608.2 393 75.1
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.1e-171 607.1 396 75.5
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 3.1e-171 605.5 401 71.8
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 9.0e-171 604.0 349 79.9
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 9.0e-171 604.0 399 74.2
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.2e-170 603.6 396 75.0
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.2e-170 603.6 401 72.1
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 4.5e-170 601.7 403 74.2
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 5.8e-170 601.3 352 82.7
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 1.0e-169 600.5 401 74.1
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 1.3e-169 600.1 421 70.8
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.2e-169 599.4 398 75.6
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 2.9e-169 599.0 396 72.0
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.4e-168 596.7 414 70.8
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.2e-168 595.5 419 71.4
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 5.5e-168 594.7 407 73.5
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 5.5e-168 594.7 407 73.5
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 1.2e-167 593.6 402 72.4
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.6e-167 593.2 435 68.7
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 2.1e-167 592.8 401 74.3
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 3.5e-167 592.0 362 78.7
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 4.6e-167 591.7 397 72.8
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 8.7e-166 587.4 399 73.2
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 8.7e-166 587.4 413 69.7
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 5.7e-165 584.7 366 76.0
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.3e-164 583.6 386 73.3
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.6e-164 583.2 398 73.4
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 4.8e-164 581.6 400 70.2
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 6.3e-164 581.3 401 72.3
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.1e-163 580.5 398 71.6
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.8e-163 579.7 398 72.9
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 3.1e-163 578.9 391 74.2
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 4.1e-163 578.6 410 70.5
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 6.9e-163 577.8 358 76.5
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 6.9e-163 577.8 417 68.8
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 9.0e-163 577.4 404 72.0
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.2e-162 577.0 395 70.6
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 4.5e-162 575.1 394 71.3
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 4.5e-162 575.1 398 71.9
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.0e-161 573.9 400 70.2
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.0e-161 573.9 400 70.8
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.3e-161 573.5 405 70.4
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.3e-161 573.5 395 70.9
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 1.3e-161 573.5 418 69.9
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.7e-161 573.2 394 71.3
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 1.7e-161 573.2 365 74.8
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 2.2e-161 572.8 399 71.9
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 2.9e-161 572.4 402 71.1
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.9e-160 569.7 400 70.5
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 5.5e-160 568.2 395 70.6
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 7.2e-160 567.8 359 74.1
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.2e-159 567.0 370 75.1
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-159 566.6 339 78.2
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 6.1e-159 564.7 400 70.0
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-158 563.5 398 70.6
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 5.1e-158 561.6 401 68.6
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 5.1e-158 561.6 404 68.3
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 5.1e-158 561.6 402 68.2
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 8.8e-158 560.8 394 71.3
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 2.5e-157 559.3 402 68.2
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 4.3e-157 558.5 401 68.8
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 5.7e-157 558.1 398 68.8
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 7.4e-157 557.8 371 74.7
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 1.3e-156 557.0 338 76.3
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.7e-156 556.6 398 68.3
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 2.2e-156 556.2 399 68.7
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 2.8e-156 555.8 339 74.9
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 2.8e-156 555.8 398 70.6
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 3.1e-155 552.4 353 73.9
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 6.9e-155 551.2 398 67.6
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-154 550.4 337 76.3
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 2.6e-154 549.3 365 72.6
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 3.4e-154 548.9 402 67.2
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.0e-153 547.4 395 68.1
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.0e-153 547.4 393 69.5
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 2.9e-153 545.8 396 67.2
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 1.4e-152 543.5 366 69.4
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 5.5e-152 541.6 298 85.9
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.2e-151 540.4 400 66.5
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.6e-151 540.0 340 72.9
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 3.9e-150 535.4 386 67.6
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 3.9e-150 535.4 374 67.4
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 5.1e-150 535.0 352 73.9
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 8.8e-150 534.3 398 68.1
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 8.8e-150 534.3 398 68.1
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 9.7e-149 530.8 398 67.8
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 3.7e-148 528.9 391 66.2
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 8.2e-148 527.7 350 71.1
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.4e-147 526.9 383 69.5
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 1.9e-144 516.5 283 84.8
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 5.5e-144 515.0 339 71.4
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 7.2e-144 514.6 397 66.0
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 3.6e-143 512.3 395 65.1
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 5.2e-142 508.4 353 67.4
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 2.0e-141 506.5 402 63.9
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 2.2e-140 503.1 298 77.5
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 2.8e-140 502.7 330 70.3
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 4.1e-139 498.8 325 72.9
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 1.7e-137 493.4 358 66.5
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 2.2e-137 493.0 358 66.5
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 1.1e-136 490.7 328 69.5
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.0e-134 484.2 401 61.6
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 6.7e-134 481.5 279 79.6
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.2e-130 470.7 426 60.8
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 1.0e-129 467.6 329 69.6
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 2.5e-128 463.0 339 64.0
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 7.5e-125 451.4 337 66.2
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 5.2e-118 428.7 349 59.9
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 1.6e-114 417.2 326 58.6
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.0e-110 404.4 263 74.5
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.3e-105 386.7 316 58.9
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 3.0e-105 386.3 321 58.3
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.1e-103 380.2 320 63.4
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.0e-97 359.8 331 58.0
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.1e-88 331.3 187 83.4
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.6e-87 327.4 268 63.1
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 4.2e-83 312.8 300 55.3
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.0e-81 308.1 278 61.2
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 4.2e-75 286.2 157 82.8
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.3e-73 281.2 275 55.3
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 5.6e-72 275.8 163 77.3
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 8.1e-63 245.4 143 75.5
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 6.0e-58 229.2 299 44.1
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-57 228.4 235 53.6
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 8.2e-55 218.8 262 49.2
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-48 198.0 326 40.2
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 7.7e-45 185.7 116 75.0
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-42 176.8 131 65.6
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 4.6e-42 176.4 200 53.5
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-41 173.7 122 72.1
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 4.8e-39 166.4 200 52.5
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 4.8e-39 166.4 200 52.5
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-29 135.2 159 48.4
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-29 135.2 159 48.4
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 1.0e-28 132.1 232 38.4
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 7.7e-21 105.9 172 37.2
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 1.5e-16 91.7 49 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 1.5e-16 91.7 49 75.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 9.8e-16 89.0 51 80.4
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 2.4e-06 57.8 39 64.1
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 3.1e-06 57.4 44 59.1
Actinidia29603 Actinidia chinensis HOM05D000367 ORTHO05D002159 9.1e-06 55.8 41 63.4
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 9.1e-06 55.8 47 53.2


User provided reference genes

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