Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 2.9e-70 268.5 137 100.0
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 2.4e-40 169.1 87 100.0
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 3.4e-39 165.2 87 95.4
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 1.8e-35 152.9 86 89.5
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 3.0e-35 152.1 87 87.4
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 1.7e-33 146.4 86 83.7
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 2.2e-33 146.0 86 87.2
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.8e-32 142.9 88 79.5
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 4.1e-32 141.7 86 81.4
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 7.0e-32 141.0 88 80.7
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 9.1e-32 140.6 86 80.2
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 9.1e-32 140.6 97 69.1
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.2e-31 140.2 86 80.2
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 1.2e-31 140.2 83 81.9
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 1.2e-31 140.2 83 81.9
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 1.5e-31 139.8 86 80.2
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 1.5e-31 139.8 86 80.2
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 2.0e-31 139.4 83 80.7
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.0e-31 139.4 83 81.9
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 2.0e-31 139.4 86 79.1
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 2.6e-31 139.0 86 79.1
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 3.5e-31 138.7 86 77.9
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 3.5e-31 138.7 87 78.2
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 5.9e-31 137.9 86 81.4
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 5.9e-31 137.9 86 77.9
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 5.9e-31 137.9 86 77.9
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 5.9e-31 137.9 86 79.1
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 5.9e-31 137.9 86 79.1
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 5.9e-31 137.9 86 77.9
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 7.7e-31 137.5 86 80.2
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 7.7e-31 137.5 86 77.9
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.3e-30 136.7 87 75.9
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 1.3e-30 136.7 87 78.2
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 1.7e-30 136.3 86 79.1
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 1.7e-30 136.3 87 74.7
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 1.7e-30 136.3 86 77.9
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 1.7e-30 136.3 86 76.7
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 1.7e-30 136.3 86 76.7
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 2.2e-30 136.0 86 80.2
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 3.8e-30 135.2 86 76.7
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 5.0e-30 134.8 86 74.4
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 5.0e-30 134.8 86 77.9
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 6.5e-30 134.4 86 76.7
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 6.5e-30 134.4 87 75.9
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 8.5e-30 134.0 87 73.6
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.1e-29 133.7 86 75.6
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.1e-29 133.7 86 75.6
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 1.1e-29 133.7 86 75.6
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.4e-29 133.3 86 72.1
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.9e-29 132.9 87 74.7
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 2.5e-29 132.5 86 77.9
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 2.5e-29 132.5 86 72.1
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 4.2e-29 131.7 83 75.9
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 5.5e-29 131.3 85 71.8
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 7.2e-29 131.0 86 76.7
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 7.2e-29 131.0 83 77.1
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 9.4e-29 130.6 86 73.3
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 9.4e-29 130.6 91 71.4
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 1.2e-28 130.2 86 72.1
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 1.2e-28 130.2 83 77.1
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 1.6e-28 129.8 86 74.4
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.6e-28 129.8 86 70.9
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 1.6e-28 129.8 87 71.3
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 1.6e-28 129.8 86 74.4
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 2.1e-28 129.4 86 70.9
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 2.7e-28 129.0 81 76.5
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 3.6e-28 128.6 86 73.3
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 4.7e-28 128.3 86 74.4
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 4.7e-28 128.3 82 78.0
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 4.7e-28 128.3 82 76.8
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 4.7e-28 128.3 86 70.9
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 6.1e-28 127.9 86 72.1
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 2.3e-27 125.9 86 70.9
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 2.3e-27 125.9 87 71.3
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 3.0e-27 125.6 99 62.6
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 3.9e-27 125.2 82 76.8
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 6.7e-27 124.4 81 74.1
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 1.1e-26 123.6 86 69.8
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 1.1e-26 123.6 83 73.5
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 4.4e-26 121.7 83 73.5
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 1.7e-25 119.8 83 72.3
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 2.2e-25 119.4 83 73.5
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.7e-25 118.6 79 74.7
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 1.1e-24 117.1 74 78.4
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 3.1e-24 115.5 82 65.9
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 5.3e-24 114.8 86 65.1
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 7.0e-24 114.4 85 63.5
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 7.0e-24 114.4 84 65.5
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 1.2e-23 113.6 71 80.3
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 1.2e-23 113.6 82 69.5
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 2.0e-23 112.8 84 63.1
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 7.7e-23 110.9 61 90.2
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 1.0e-22 110.5 82 70.7
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 1.3e-22 110.2 82 65.9
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 1.7e-22 109.8 82 64.6
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 3.8e-22 108.6 82 64.6
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 3.8e-22 108.6 102 53.9
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 8.5e-22 107.5 82 64.6
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 8.5e-22 107.5 82 63.4
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 1.1e-21 107.1 82 62.2
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 1.9e-21 106.3 82 61.0
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 1.9e-21 106.3 82 61.0
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 2.5e-21 105.9 82 61.0
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 7.2e-21 104.4 82 59.8
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 1.2e-20 103.6 82 59.8
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 1.2e-20 103.6 82 59.8
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 1.4e-19 100.1 86 58.1
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 3.0e-19 99.0 80 60.0
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 6.8e-19 97.8 86 60.5
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 3.4e-18 95.5 83 54.2
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 1.4e-16 90.1 60 73.3
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 7.7e-15 84.3 68 61.8
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 5.0e-14 81.6 82 51.2
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 5.0e-14 81.6 58 70.7
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 8.5e-14 80.9 72 59.7
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 5.5e-13 78.2 60 66.7
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 1.2e-12 77.0 82 50.0
Psat0s466g0120 Pisum sativum HOM05D006477 ORTHO05D008311 2.1e-12 76.3 60 65.0
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 2.7e-12 75.9 44 81.8
Psat7g168960 Pisum sativum HOM05D006477 ORTHO05D008311 4.0e-11 72.0 60 60.0
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 4.0e-11 72.0 44 79.5
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 9.8e-10 67.4 62 56.5
PSO017G6472 Papaver somniferum HOM05D006477 ORTHO05D008311 2.7e-07 59.3 48 62.5
PSO017G6604 Papaver somniferum HOM05D006477 ORTHO05D008311 2.7e-07 59.3 48 62.5


User provided reference genes

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