Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 4.4e-245 850.9 441 100.0
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 7.0e-243 843.6 441 99.1
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 3.0e-230 801.6 468 90.2
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.7e-209 732.6 442 86.7
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 4.6e-202 708.0 441 85.5
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 4.9e-196 688.0 396 90.2
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.9e-179 632.9 442 77.1
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 1.3e-164 583.6 457 68.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.9e-164 582.4 455 67.9
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 7.9e-162 574.3 411 72.3
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.3e-159 567.0 455 67.7
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 8.2e-159 564.3 519 61.1
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 9.1e-158 560.8 444 68.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.2e-157 560.5 367 76.6
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 1.4e-155 553.5 450 65.8
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 7.2e-155 551.2 479 63.0
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 4.7e-154 548.5 450 66.7
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 1.0e-153 547.4 443 66.4
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 6.7e-153 544.7 450 66.4
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 1.1e-152 543.9 452 65.5
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 3.3e-152 542.3 450 64.0
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 7.4e-152 541.2 450 64.0
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 7.4e-152 541.2 447 64.2
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 1.7e-151 540.0 452 63.9
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 6.3e-151 538.1 449 65.5
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 6.3e-151 538.1 450 64.9
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 8.2e-151 537.7 454 63.7
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 1.1e-150 537.3 456 63.8
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.4e-150 537.0 387 71.3
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.4e-150 537.0 464 63.1
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 7.0e-150 534.6 446 63.5
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 7.0e-150 534.6 450 64.2
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 9.1e-150 534.3 462 64.1
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.2e-149 533.9 447 64.2
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 1.5e-149 533.5 447 64.4
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 2.6e-149 532.7 446 64.1
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 5.9e-149 531.6 450 64.4
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.0e-148 530.8 441 65.8
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 1.7e-148 530.0 449 63.3
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.7e-148 530.0 460 63.9
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 2.2e-148 529.6 451 64.7
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 2.2e-148 529.6 406 68.2
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 8.5e-148 527.7 462 63.2
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.1e-147 527.3 416 67.1
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 3.2e-147 525.8 447 62.2
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 5.5e-147 525.0 469 62.5
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 5.5e-147 525.0 443 63.9
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 9.4e-147 524.2 359 74.4
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 1.6e-146 523.5 458 61.8
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 2.1e-146 523.1 381 71.4
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.4e-145 520.4 371 71.7
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 3.0e-145 519.2 450 62.2
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 1.5e-144 516.9 452 63.1
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 3.3e-144 515.8 455 63.5
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 7.4e-144 514.6 339 75.2
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 9.7e-144 514.2 449 62.1
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 9.7e-144 514.2 374 69.3
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 1.3e-143 513.8 455 62.2
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.8e-143 512.7 455 61.8
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 6.3e-143 511.5 459 61.9
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.1e-142 510.8 452 61.1
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 7.0e-142 508.1 376 69.4
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.2e-141 507.3 442 61.8
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.7e-140 503.4 385 68.6
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 1.7e-140 503.4 473 60.3
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 3.8e-140 502.3 413 65.4
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 9.4e-139 497.7 366 68.0
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 1.6e-138 496.9 373 68.6
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.6e-138 496.9 373 67.8
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 2.1e-138 496.5 448 60.9
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 2.7e-138 496.1 385 65.7
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 8.0e-138 494.6 376 67.8
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 1.4e-137 493.8 375 67.7
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 2.3e-137 493.0 444 59.5
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 8.8e-137 491.1 421 62.9
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 9.7e-136 487.6 402 62.7
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 1.3e-135 487.3 448 61.4
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.7e-135 486.9 451 60.5
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.7e-135 486.9 443 59.6
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 3.1e-134 482.6 396 65.2
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.2e-133 480.7 449 59.5
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.2e-133 480.7 424 60.1
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 1.6e-133 480.3 362 67.7
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 2.0e-133 479.9 378 67.7
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.3e-132 477.2 371 66.3
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 2.9e-132 476.1 443 59.4
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 8.5e-132 474.6 444 59.5
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 8.5e-132 474.6 445 60.0
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 3.2e-131 472.6 440 57.7
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 5.5e-131 471.9 438 58.0
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 7.2e-131 471.5 349 67.6
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 4.7e-130 468.8 440 58.0
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 6.1e-130 468.4 355 65.6
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.4e-129 467.2 440 58.6
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 1.7e-127 460.3 353 65.4
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 2.2e-127 459.9 346 68.2
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 2.2e-127 459.9 346 68.2
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 2.1e-122 443.4 302 72.2
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 8.0e-122 441.4 341 66.0
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.3e-121 439.9 334 65.6
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-120 437.6 331 66.2
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 1.5e-120 437.2 349 65.3
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.3e-119 434.1 333 65.5
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 9.2e-118 427.9 450 55.1
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 2.5e-115 419.9 328 68.0
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 6.4e-111 405.2 327 66.7
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.9e-107 393.7 315 68.6
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 9.5e-107 391.3 253 77.1
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 6.8e-105 385.2 302 61.9
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 2.7e-101 373.2 354 53.1
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.3e-100 370.2 295 66.8
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 7.3e-99 365.2 368 51.6
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 9.2e-94 348.2 346 52.3
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.5e-91 340.9 245 69.4
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 2.8e-90 336.7 430 44.2
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.3e-87 327.8 242 67.4
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 1.9e-83 313.9 261 58.2
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.6e-82 310.8 201 75.1
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.8e-81 307.4 346 54.6
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 2.1e-69 267.3 287 51.2
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 2.7e-69 266.9 278 50.7
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 2.3e-68 263.8 350 43.1
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 2.5e-67 260.4 283 49.5
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 3.7e-66 256.5 283 50.9
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 9.0e-65 251.9 186 65.6
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 7.9e-61 238.8 170 70.6
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 4.6e-53 213.0 238 51.7
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 6.5e-47 192.6 206 53.4
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 8.2e-42 175.6 206 54.9
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.8e-34 150.6 296 35.5
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 5.0e-31 139.8 121 60.3
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 3.3e-27 127.1 83 73.5
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 7.5e-27 125.9 83 72.3
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 1.4e-25 121.7 76 72.4
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 6.1e-21 106.3 72 70.8
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.0e-20 105.5 90 64.4
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 2.6e-19 100.9 72 68.1
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 1.7e-15 88.2 99 51.5
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 4.1e-09 67.0 76 53.9
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.2e-08 65.5 57 59.6
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 5.6e-06 56.6 37 75.7


User provided reference genes

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