Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 0.0e+00 1222.2 666 100.0
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 0.0e+00 1151.0 691 91.5
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 8.8e-306 1053.1 695 86.2
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 3.7e-219 765.4 715 65.5
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 7.4e-212 741.1 715 64.2
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 2.6e-132 476.9 666 49.7
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 4.2e-82 310.1 691 38.1
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 1.5e-79 301.6 655 35.7
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 9.7e-71 272.3 708 34.0
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 9.7e-71 272.3 694 35.3
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 9.7e-71 272.3 667 35.5
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 1.4e-69 268.5 636 35.8
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 6.1e-65 253.1 703 33.9
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 3.5e-60 237.3 704 31.1
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 1.3e-59 235.3 645 33.2
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 1.9e-58 231.5 651 34.1
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 7.2e-58 229.6 677 32.6
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 1.6e-57 228.4 673 32.4
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 8.0e-57 226.1 683 33.5
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 1.2e-55 222.2 681 32.3
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 3.4e-55 220.7 667 33.6
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 9.8e-55 219.2 682 33.9
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 9.8e-55 219.2 650 35.8
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 8.3e-54 216.1 697 31.3
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 1.8e-53 214.9 676 34.2
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 7.0e-53 213.0 663 30.9
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 2.7e-52 211.1 651 33.5
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 3.5e-52 210.7 634 34.1
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 1.0e-51 209.1 666 33.2
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 8.6e-51 206.1 686 32.4
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 2.5e-50 204.5 668 31.6
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 3.3e-50 204.1 684 31.4
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 4.2e-50 203.8 676 33.0
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.2e-50 203.8 676 33.0
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 1.6e-49 201.8 670 31.3
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 3.6e-49 200.7 661 32.1
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.0e-48 199.1 676 32.7
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 2.3e-48 198.0 649 34.2
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 5.2e-48 196.8 674 31.5
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 5.2e-48 196.8 650 31.2
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 6.8e-48 196.4 681 31.3
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 6.8e-48 196.4 675 31.3
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 1.2e-47 195.7 671 32.0
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 1.5e-47 195.3 675 31.7
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 1.5e-47 195.3 649 32.2
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 2.0e-47 194.9 686 31.2
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 2.2e-46 191.4 691 30.5
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 2.8e-46 191.0 650 30.6
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 3.3e-42 177.6 647 31.4
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 1.4e-40 172.2 656 31.2
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 5.2e-40 170.2 686 31.2
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 2.0e-39 168.3 683 30.2
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 3.4e-39 167.5 663 31.1
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 6.4e-38 163.3 712 30.9
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 2.4e-37 161.4 692 29.6
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 3.2e-37 161.0 672 29.3
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 4.1e-37 160.6 632 30.4
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 7.0e-37 159.8 625 30.6
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 7.0e-37 159.8 673 30.0
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 2.7e-36 157.9 656 29.9
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 2.3e-35 154.8 638 31.2
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 2.3e-35 154.8 614 32.1
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 5.0e-35 153.7 694 29.3
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 5.0e-35 153.7 434 33.9
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 2.1e-33 148.3 681 29.8
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 4.7e-33 147.1 667 27.6
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 8.0e-33 146.4 263 41.1
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 3.1e-32 144.4 650 28.6
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 3.1e-32 144.4 516 32.6
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 1.2e-31 142.5 262 42.4
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 7.5e-31 139.8 595 30.1
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 1.3e-30 139.0 664 26.7
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 3.2e-29 134.4 669 28.1
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 5.4e-29 133.7 672 27.8
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 2.7e-28 131.3 485 30.9
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 1.0e-27 129.4 627 27.9
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 1.3e-27 129.0 516 27.9
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 1.7e-27 128.6 556 29.0
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 2.3e-27 128.3 636 28.0
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 2.5e-26 124.8 665 26.2
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 3.3e-26 124.4 669 28.0
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 3.3e-26 124.4 669 28.0
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 3.3e-26 124.4 669 28.0
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 5.6e-26 123.6 644 25.9
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 1.2e-25 122.5 669 28.0
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 6.8e-24 116.7 511 27.6
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 4.4e-23 114.0 671 26.8
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 9.9e-23 112.8 406 29.8
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 2.2e-22 111.7 319 36.1
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 3.7e-22 110.9 184 41.3
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 1.1e-21 109.4 491 27.7
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 4.1e-21 107.5 755 26.6
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 7.1e-21 106.7 415 30.8
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 1.2e-20 105.9 779 24.9
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.6e-20 105.5 113 51.3
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 2.7e-20 104.8 111 51.4
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.0e-19 102.8 110 50.0
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 5.1e-19 100.5 470 27.7
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 6.6e-19 100.1 468 26.7
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 3.3e-18 97.8 432 30.1
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 1.6e-17 95.5 102 46.1
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 2.0e-15 88.6 235 34.0
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 1.7e-14 85.5 167 37.1
EL10Ac2g03667 Beta vulgaris HOM05D007342 ORTHO05D009252 2.7e-12 78.2 488 28.1
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 5.6e-10 70.5 102 37.3
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 7.3e-10 70.1 99 36.4
TAR633G1503 Trochodendron aralioides HOM05D007342 ORTHO05D009252 6.2e-09 67.0 211 30.8
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 8.1e-09 66.6 102 36.3
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 1.8e-08 65.5 102 31.4
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 2.4e-08 65.1 97 37.1
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 5.3e-08 63.9 72 43.1
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 5.3e-08 63.9 98 38.8
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 6.9e-08 63.5 97 36.1
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 9.0e-08 63.2 108 30.6
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 1.5e-07 62.4 95 35.8
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 1.5e-07 62.4 77 37.7
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 1.5e-07 62.4 108 30.6
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 1.5e-07 62.4 71 40.8
Ah.11g044170 Amaranthus hybridus HOM05D007342 ORTHO05D009252 2.0e-07 62.0 249 31.3
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 2.0e-07 62.0 71 39.4
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 2.0e-07 62.0 77 37.7
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 2.0e-07 62.0 95 33.7
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 2.6e-07 61.6 92 32.6
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 2.6e-07 61.6 101 30.7
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 3.4e-07 61.2 102 32.4
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 3.4e-07 61.2 71 40.8
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 3.4e-07 61.2 71 39.4
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 3.4e-07 61.2 102 33.3
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 3.4e-07 61.2 71 40.8
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 4.4e-07 60.8 95 33.7
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 4.4e-07 60.8 89 33.7
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 5.8e-07 60.5 89 34.8
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 5.8e-07 60.5 71 40.8
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 5.8e-07 60.5 95 33.7
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 7.6e-07 60.1 102 32.4
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 7.6e-07 60.1 95 34.7
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 9.9e-07 59.7 102 31.4
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 9.9e-07 59.7 71 40.8
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 9.9e-07 59.7 102 30.4
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 9.9e-07 59.7 75 41.3
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 1.3e-06 59.3 108 28.7
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 1.7e-06 58.9 97 32.0
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 1.7e-06 58.9 69 40.6
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 1.7e-06 58.9 108 29.6
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 1.7e-06 58.9 95 32.6
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 1.7e-06 58.9 71 38.0
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 1.7e-06 58.9 101 30.7
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 1.7e-06 58.9 71 39.4
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 1.7e-06 58.9 99 31.3
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 2.2e-06 58.5 97 33.0
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 2.2e-06 58.5 97 32.0
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 2.2e-06 58.5 102 31.4
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 2.2e-06 58.5 95 32.6
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 2.2e-06 58.5 95 32.6
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 2.9e-06 58.2 97 32.0
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 2.9e-06 58.2 71 36.6
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 2.9e-06 58.2 97 32.0
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 2.9e-06 58.2 71 36.6
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.9e-06 58.2 71 36.6
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.9e-06 58.2 71 36.6
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.9e-06 58.2 71 36.6
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 2.9e-06 58.2 102 31.4
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 2.9e-06 58.2 71 36.6
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 2.9e-06 58.2 95 32.6
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 3.8e-06 57.8 97 32.0
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 3.8e-06 57.8 97 32.0
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.8e-06 57.8 71 36.6
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.8e-06 57.8 71 36.6
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 3.8e-06 57.8 77 33.8
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 3.8e-06 57.8 95 31.6
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 4.9e-06 57.4 95 31.6
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 4.9e-06 57.4 71 35.2
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 4.9e-06 57.4 94 31.9
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 6.4e-06 57.0 99 32.3
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 6.4e-06 57.0 101 29.7
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 8.4e-06 56.6 97 32.0
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 8.4e-06 56.6 109 30.3


User provided reference genes

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