Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1782.7 888 100.0
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1760.0 892 98.8
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1610.5 894 90.9
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1573.1 894 88.1
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1493.4 856 87.3
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1492.6 904 84.0
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1259.2 869 73.4
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1256.1 890 71.0
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1252.3 894 71.1
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1225.3 907 70.7
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1224.9 915 68.5
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1214.1 897 69.7
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1212.6 897 70.0
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1208.7 897 69.0
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1208.4 897 69.0
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1206.8 854 70.7
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1204.5 896 69.9
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1204.1 897 69.0
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1204.1 905 68.6
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1202.6 898 68.7
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1200.3 903 68.9
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1193.7 866 69.6
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1193.3 858 70.3
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1185.6 937 65.0
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1184.1 897 68.2
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1179.9 852 70.3
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1179.9 866 69.2
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1178.7 897 67.7
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1177.9 866 69.1
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1174.8 851 68.7
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1173.3 866 68.9
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1171.8 897 68.0
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1168.3 856 68.5
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1162.5 851 68.7
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1162.1 858 68.8
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1158.7 1004 61.0
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1158.3 898 67.1
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1145.6 860 67.9
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 0.0e+00 1133.2 870 67.2
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1131.3 876 65.8
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1125.2 854 67.9
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1125.2 855 67.6
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1121.3 841 68.3
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1118.6 865 67.2
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1114.4 866 65.6
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1097.8 851 66.2
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1096.6 851 66.0
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1094.0 851 65.9
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1092.0 854 65.1
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1079.3 793 68.5
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1078.2 897 64.3
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1077.4 843 65.8
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 6.1e-312 1074.3 885 63.7
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 6.1e-312 1074.3 885 63.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 2.7e-310 1068.5 897 63.0
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 2.7e-310 1068.5 839 65.6
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 4.6e-310 1067.8 856 64.1
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 6.0e-310 1067.4 964 59.3
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 1.6e-307 1059.3 883 63.4
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 2.8e-307 1058.5 895 62.7
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.1e-306 1056.6 880 63.8
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 1.3e-304 1049.7 854 63.5
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 8.4e-304 1047.0 811 66.3
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 3.2e-303 1045.0 902 63.5
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 3.5e-302 1041.6 853 64.2
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 4.6e-302 1041.2 854 62.8
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 1.7e-301 1039.3 857 64.1
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 4.3e-300 1034.6 865 63.4
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 5.6e-300 1034.2 842 64.1
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 3.6e-299 1031.6 850 63.4
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 1.3e-296 1023.1 862 63.9
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 4.9e-296 1021.1 823 65.4
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 5.1e-293 1011.1 850 61.5
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 8.7e-293 1010.4 859 63.3
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 1.8e-290 1002.7 973 57.3
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 1.2e-286 989.9 866 60.2
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 4.2e-279 964.9 850 59.3
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 5.5e-279 964.5 849 59.4
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 3.9e-277 958.4 849 59.0
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 2.8e-275 952.2 868 58.5
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 6.3e-275 951.0 846 59.0
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 2.0e-273 946.0 867 58.4
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 2.7e-270 935.6 850 58.8
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 2.7e-270 935.6 850 58.8
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 4.6e-270 934.9 857 58.2
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 9.7e-268 927.2 851 58.4
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 1.8e-266 922.9 851 58.2
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.2e-264 916.0 856 56.9
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 3.6e-262 908.7 842 58.1
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 4.7e-262 908.3 849 57.5
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 1.0e-261 907.1 841 57.9
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 2.7e-254 882.5 774 60.7
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.0e-241 839.7 856 54.3
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 1.4e-234 817.0 786 57.8
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 2.0e-228 796.6 786 56.7
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 6.0e-217 758.4 726 57.4
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 2.1e-198 696.8 897 47.5
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 3.6e-198 696.0 521 68.9
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.7e-195 687.2 910 45.3
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.5e-193 679.5 903 46.4
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.5e-175 620.2 398 76.4
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 4.2e-170 602.8 620 54.5
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.1e-165 586.6 842 44.2
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 1.5e-164 584.3 410 71.7
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 4.5e-164 582.8 503 63.0
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.0e-160 571.6 369 76.4
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 2.2e-150 537.3 449 63.0
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.0e-136 490.3 366 67.8
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 6.1e-121 439.5 504 50.8
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.7e-102 378.3 270 66.7
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 1.1e-88 332.4 280 59.3
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 4.0e-88 330.5 375 52.3
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.0e-83 314.3 554 40.4
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.0e-83 314.3 554 40.4
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 4.4e-79 300.4 175 84.6
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.6e-73 280.8 371 47.7
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 3.6e-73 280.8 856 29.7
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 4.8e-73 280.4 284 54.9
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 3.1e-72 277.7 151 88.7
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 1.4e-61 242.3 145 82.8
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.4e-61 242.3 137 85.4
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.9e-54 217.2 137 75.9
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 1.3e-51 209.1 117 78.6
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 5.7e-50 203.8 311 38.9
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 1.2e-44 186.0 214 43.5
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 3.8e-30 137.9 270 33.0
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 4.2e-29 134.4 183 49.2
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 1.7e-25 122.5 105 63.8
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 7.0e-24 117.1 161 41.0
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 5.9e-23 114.0 129 48.1
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 1.7e-14 85.9 73 63.0
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 3.8e-14 84.7 57 64.9
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 6.5e-14 84.0 229 27.1
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 1.1e-13 83.2 67 65.7
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 1.5e-13 82.8 129 39.5
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.2e-13 81.6 75 56.0
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-12 79.0 72 56.9
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.7e-12 78.6 72 56.9
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.7e-12 78.6 55 70.9
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 2.0e-10 72.4 33 90.9
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 4.4e-10 71.2 118 39.0
HanXRQChr09g0244011 Helianthus annuus HOM05D005283 ORTHO05D006769 7.0e-08 63.9 77 49.4


User provided reference genes

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