Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1911.7 966 100.0
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1889.0 966 98.8
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1760.0 968 92.1
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1722.6 972 89.7
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1706.8 996 88.1
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1700.6 984 88.8
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1641.3 842 98.2
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1591.2 969 83.4
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1588.9 978 82.6
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1588.9 971 83.2
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1587.4 978 82.5
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1587.0 973 82.5
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1585.5 977 82.5
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1577.4 979 81.7
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1576.2 900 87.2
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1575.5 974 82.0
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1574.7 969 82.9
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1573.1 980 81.4
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1570.1 978 81.6
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1568.9 978 81.7
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1565.1 973 81.0
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1563.1 974 81.6
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1562.0 968 81.0
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1560.8 914 84.9
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1560.0 900 86.4
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1559.7 875 88.2
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1558.1 971 81.3
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1557.7 985 80.6
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1557.3 982 81.0
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1555.0 958 82.4
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1549.6 982 80.2
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1548.9 969 81.7
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1544.3 907 85.4
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1541.6 875 88.0
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1539.2 907 85.1
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1537.7 898 86.1
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1537.3 976 79.7
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1536.2 874 86.7
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1535.0 967 80.8
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1531.9 886 85.7
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1531.9 969 80.1
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1531.5 891 85.7
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1529.2 977 79.6
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1527.7 891 85.1
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1525.8 902 85.3
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 975 79.5
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1524.6 889 84.1
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 972 79.5
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1523.1 899 85.0
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1520.8 971 79.5
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1519.6 900 84.0
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 981 78.7
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 981 78.7
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 974 79.5
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1512.7 971 79.4
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 890 84.7
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 874 86.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1510.4 889 84.6
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 890 84.4
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 889 84.4
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 874 85.8
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1508.0 981 78.6
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1505.7 974 78.7
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1505.3 889 84.6
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1503.8 890 83.5
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1502.6 874 85.2
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 873 85.8
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 917 82.1
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 873 84.9
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 892 83.6
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1501.1 857 86.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1498.4 927 79.8
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 889 83.4
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 889 83.0
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1495.7 889 83.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1495.3 889 82.9
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 1002 76.9
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 915 82.5
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 893 83.1
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1491.1 858 85.4
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 890 82.9
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 936 79.9
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 880 85.5
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 932 79.3
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1488.0 890 82.7
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 844 87.4
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 890 82.7
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1486.1 875 83.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 890 82.6
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1485.3 896 82.3
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1480.3 873 83.4
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1479.9 934 80.8
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 857 85.8
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1471.4 948 78.0
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1469.9 891 80.7
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1469.1 895 81.0
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 876 82.5
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1465.7 858 84.6
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1463.4 955 78.7
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1458.7 858 83.8
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1455.3 934 80.0
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1452.6 899 80.4
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1451.0 853 84.9
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1443.7 873 81.1
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1438.3 875 80.9
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1431.0 1092 70.4
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 902 79.5
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1419.8 844 82.6
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1418.3 877 82.4
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1409.8 968 75.3
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1406.7 866 80.7
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1404.0 885 78.4
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1402.1 872 81.1
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 882 80.7
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1395.6 911 75.9
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1391.7 897 76.4
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1389.0 774 88.9
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1379.8 870 77.8
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1376.7 874 79.9
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1360.9 806 82.4
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1357.4 823 81.0
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1352.8 877 77.9
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1333.5 802 82.9
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1328.9 902 75.5
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1303.9 880 77.5
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1302.7 881 76.8
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1265.4 874 74.7
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1264.2 824 78.5
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1233.8 779 79.1
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1229.9 730 81.9
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1191.8 870 70.8
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1181.8 857 68.5
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1177.5 877 67.5
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1107.8 633 85.6
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 9.1e-304 1047.0 581 88.5
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 7.7e-303 1043.9 883 60.7
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 5.2e-267 924.9 642 74.5
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.5e-258 896.7 906 54.4
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.9e-215 751.5 466 81.3
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.4e-213 745.0 505 76.0
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 9.7e-213 744.6 442 84.4
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.6e-191 674.1 451 76.3
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 8.0e-191 671.8 418 81.3
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 3.4e-181 639.8 744 49.1
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-164 584.7 338 85.5
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.7e-164 584.3 467 66.2
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.3e-140 505.0 296 83.1
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 2.5e-136 490.7 391 65.0
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.7e-113 412.9 423 54.6
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 5.9e-101 373.2 318 63.8
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 3.7e-95 354.0 219 79.9
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-87 328.2 274 63.5
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 9.5e-67 259.6 227 62.6
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 4.1e-62 244.2 216 59.7
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.5e-59 235.7 151 77.5
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.2e-47 195.3 119 78.2
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-39 169.5 268 42.2
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.5e-35 155.2 114 69.3
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.3e-31 142.9 85 82.4
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 4.2e-30 137.9 81 85.2
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.7e-29 135.2 91 71.4
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 7.8e-29 133.7 83 79.5
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.1e-25 123.2 455 28.4
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 3.1e-25 121.7 130 55.4
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-23 115.2 95 63.2
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 6.9e-17 94.0 60 71.7
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 7.6e-16 90.5 56 71.4
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 3.0e-12 78.6 57 70.2
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 7.4e-11 73.9 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 9.6e-11 73.6 49 73.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 8.1e-10 70.5 46 67.4
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.8e-09 69.3 46 69.6
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 6.9e-09 67.4 36 80.6
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 7.6e-08 63.9 43 67.4
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.3e-07 63.2 56 60.7


User provided reference genes

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