Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 1.4e-230 803.1 598 100.0
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 2.9e-223 778.9 598 98.0
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 8.7e-188 661.0 598 89.1
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 4.1e-169 599.0 598 83.9
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.8e-161 573.5 599 81.0
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 7.0e-153 545.0 587 80.1
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 3.8e-143 512.7 514 61.1
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 4.4e-131 472.6 558 78.5
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 4.6e-120 436.0 563 62.3
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 2.1e-101 374.0 600 64.0
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 6.2e-101 372.5 598 64.4
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 1.7e-90 337.8 604 46.9
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 4.2e-89 333.2 385 63.6
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 1.3e-87 328.2 386 63.7
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 4.3e-86 323.2 567 47.1
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 2.1e-85 320.9 604 58.4
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.0e-84 316.6 599 60.3
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 2.0e-83 314.3 559 61.9
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 7.6e-83 312.4 603 58.2
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 3.2e-81 307.0 382 62.8
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 3.5e-80 303.5 387 62.0
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 3.0e-79 300.4 387 58.9
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 2.1e-77 294.3 387 58.9
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 1.5e-75 288.1 600 54.7
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 8.4e-74 282.3 601 57.1
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 1.1e-73 282.0 602 43.4
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 2.5e-73 280.8 387 57.6
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 4.2e-73 280.0 373 61.1
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 7.1e-73 279.3 387 57.1
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 9.3e-73 278.9 387 59.7
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 2.7e-72 277.3 385 59.2
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 1.8e-71 274.6 385 59.0
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 1.5e-70 271.6 602 51.2
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 1.5e-70 271.6 602 56.3
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 8.2e-69 265.8 599 47.1
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 1.8e-68 264.6 384 58.1
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 1.2e-67 261.9 561 53.3
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 2.9e-66 257.3 387 56.8
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 1.9e-65 254.6 385 57.7
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 7.2e-65 252.7 603 48.9
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 4.6e-64 250.0 602 55.3
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 5.1e-63 246.5 384 57.0
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 1.9e-62 244.6 603 51.9
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 1.4e-60 238.4 603 48.8
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 5.0e-58 229.9 612 50.7
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 3.2e-57 227.3 385 54.3
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 7.2e-57 226.1 384 53.9
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 2.7e-56 224.2 385 55.1
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 5.7e-54 216.5 488 54.7
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 9.7e-54 215.7 199 53.3
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.2e-53 214.5 522 33.9
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 4.8e-53 213.4 475 53.3
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 1.4e-52 211.8 570 40.0
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 2.4e-52 211.1 530 41.7
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 1.2e-51 208.8 347 56.8
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 5.9e-51 206.5 601 51.9
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 5.0e-50 203.4 170 54.1
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 3.2e-49 200.7 564 52.8
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 3.2e-49 200.7 598 48.8
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 5.5e-49 199.9 384 51.3
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 1.2e-48 198.7 615 47.2
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 2.0e-46 191.4 611 49.8
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 3.3e-46 190.7 211 44.1
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 4.8e-45 186.8 540 46.5
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 4.2e-41 173.7 387 30.2
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 7.2e-41 172.9 530 38.9
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 2.7e-40 171.0 385 28.3
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 2.7e-40 171.0 385 28.3
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 8.0e-40 169.5 535 30.8
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 3.0e-39 167.5 386 42.2
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 4.0e-39 167.2 379 47.8
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 2.0e-38 164.9 384 47.1
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 7.5e-38 162.9 178 44.9
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 1.3e-37 162.2 384 27.9
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 4.8e-37 160.2 538 44.2
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 7.0e-36 156.4 386 30.6
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 7.0e-36 156.4 386 30.6
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 1.7e-34 151.8 384 45.6
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 2.9e-34 151.0 535 37.2
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 1.9e-33 148.3 385 43.4
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 7.2e-33 146.4 262 34.0
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.0e-31 142.5 107 57.9
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 7.0e-28 129.8 105 57.1
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 9.1e-28 129.4 595 26.4
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.1e-25 122.5 504 38.7
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 4.7e-24 117.1 515 37.5
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 6.1e-24 116.7 576 31.4
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 2.0e-22 111.7 611 34.4
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.4e-22 110.5 127 40.9
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 3.8e-18 97.4 64 65.6
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 5.6e-17 93.6 75 54.7
HanXRQChr14g0455831 Helianthus annuus HOM05D007383 ORTHO05D009254 1.0e-10 72.8 179 29.6
HanXRQChr02g0043781 Helianthus annuus HOM05D007383 ORTHO05D009254 3.0e-10 71.2 179 29.1
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 2.5e-09 68.2 167 26.3
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 2.5e-09 68.2 209 26.3
AL5G29690 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 3.3e-09 67.8 167 26.3
CARHR158820 Cardamine hirsuta HOM05D000424 ORTHO05D000355 3.3e-09 67.8 167 26.3
Lalb_Chr24g0398401 Lupinus albus HOM05D007145 ORTHO05D008952 1.2e-08 65.9 211 23.7
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 1.6e-08 65.5 167 26.3
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 2.8e-08 64.7 167 25.1
AUR62043158 Chenopodium quinoa HOM05D007145 ORTHO05D008952 4.7e-08 63.9 191 24.1
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 8.0e-08 63.2 167 25.1
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 8.0e-08 63.2 204 23.0
Cpa.g.sc58.66 Carica papaya HOM05D000424 ORTHO05D000355 1.4e-07 62.4 159 25.2
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 1.4e-07 62.4 167 23.4
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 1.4e-07 62.4 210 24.3
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 1.8e-07 62.0 204 22.5
HPP92_016385 Vanilla planifolia HOM05D007173 ORTHO05D009151 2.3e-07 61.6 172 25.0
Ah.08g214310 Amaranthus hybridus HOM05D000424 ORTHO05D000355 3.1e-07 61.2 154 26.0
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 3.1e-07 61.2 168 25.6
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 4.0e-07 60.8 175 21.7
CiPaw.01G197700 Carya illinoinensis HOM05D000424 ORTHO05D000355 4.0e-07 60.8 174 24.1
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 4.0e-07 60.8 204 23.5
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 4.0e-07 60.8 204 22.5
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 5.2e-07 60.5 135 25.2
CANSAT78G0678 Cannabis sativa HOM05D000424 ORTHO05D000355 8.9e-07 59.7 169 26.0
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 1.2e-06 59.3 167 23.4
Medtr6g075180 Medicago truncatula HOM05D007145 ORTHO05D008952 1.2e-06 59.3 197 23.9
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 1.5e-06 58.9 167 23.4
Aqoxy2G03436 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 2.6e-06 58.2 158 27.2
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 2.6e-06 58.2 151 25.2
CsaV3_2G032830 Cucumis sativus L. HOM05D000424 ORTHO05D000355 2.6e-06 58.2 155 25.8
QL06p001583 Quercus lobata HOM05D000424 ORTHO05D000355 2.6e-06 58.2 171 24.6
Ah.03g138540 Amaranthus hybridus HOM05D007145 ORTHO05D008952 3.4e-06 57.8 190 23.7
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 3.4e-06 57.8 135 25.2
PGR102G2719 Punica granatum HOM05D000424 ORTHO05D000355 3.4e-06 57.8 167 24.0
TWI53G1953 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 3.4e-06 57.8 161 23.6
AUR62040041 Chenopodium quinoa HOM05D007145 ORTHO05D008952 4.4e-06 57.4 190 23.7
AUR62043199 Chenopodium quinoa HOM05D004271 ORTHO05D006011 4.4e-06 57.4 179 22.9
ClCG06G008020 Citrullus lanatus HOM05D007145 ORTHO05D008952 4.4e-06 57.4 193 24.9
MD14G1187700 Malus domestica HOM05D007383 ORTHO05D009254 4.4e-06 57.4 177 26.0
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 5.8e-06 57.0 175 21.7
Cfa008465 Carpinus fangiana HOM05D000424 ORTHO05D000355 5.8e-06 57.0 170 22.4
AUR62020973 Chenopodium quinoa HOM05D004271 ORTHO05D006011 5.8e-06 57.0 179 22.9
Eucgr.H02347 Eucalyptus grandis HOM05D000424 ORTHO05D000355 5.8e-06 57.0 151 23.8
MBI13_g43947_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 5.8e-06 57.0 212 24.5
THA.LOC104808562 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 5.8e-06 57.0 137 24.1
ATR0665G502 Amborella trichopoda HOM05D000424 ORTHO05D008586 7.5e-06 56.6 155 25.2
Thecc.10G093200 Theobroma cacao HOM05D007145 ORTHO05D008952 7.5e-06 56.6 193 23.8
Atru.chr4.2418 Acer truncatum HOM05D000424 ORTHO05D000355 9.8e-06 56.2 158 24.7
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 9.8e-06 56.2 137 26.3
MBI13_g05941_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D000355 9.8e-06 56.2 203 24.6
Manes.14G070900 Manihot esculenta HOM05D007383 ORTHO05D009254 9.8e-06 56.2 160 26.2
Potri.010G083800 Populus trichocarpa HOM05D000424 ORTHO05D000355 9.8e-06 56.2 170 20.0
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 9.8e-06 56.2 64 43.8


User provided reference genes

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