Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 4.4e-220 767.7 400 100.0
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 3.5e-209 731.5 386 99.2
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 1.2e-204 716.5 386 97.2
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 3.4e-188 661.8 390 91.5
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 1.5e-183 646.4 424 81.4
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 6.9e-173 610.9 391 85.4
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 2.7e-137 492.7 392 67.3
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 1.2e-127 460.7 385 64.7
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 2.9e-126 456.1 389 64.0
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 4.9e-126 455.3 335 70.7
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 8.3e-126 454.5 357 67.2
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 1.8e-125 453.4 387 63.0
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 7.8e-124 448.0 385 62.6
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 2.3e-123 446.4 391 62.1
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 1.5e-122 443.7 339 68.7
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 3.4e-119 432.6 386 61.7
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 7.5e-119 431.4 365 62.7
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 3.7e-118 429.1 391 59.8
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 8.3e-118 427.9 386 61.1
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 8.3e-118 427.9 378 61.4
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 3.2e-117 426.0 379 59.9
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 9.2e-117 424.5 394 57.9
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 2.0e-116 423.3 410 56.6
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 2.7e-116 422.9 334 65.9
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 7.8e-116 421.4 380 59.5
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.3e-115 420.6 345 64.1
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 1.3e-115 420.6 377 58.9
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 1.3e-115 420.6 341 63.0
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 1.7e-115 420.2 376 59.8
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 3.9e-115 419.1 318 67.3
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 6.6e-115 418.3 377 58.6
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 6.6e-115 418.3 353 62.3
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 6.6e-115 418.3 383 58.5
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 8.6e-115 417.9 352 63.4
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 2.5e-114 416.4 351 64.1
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 2.5e-114 416.4 329 64.1
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 3.3e-114 416.0 314 67.5
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 3.3e-114 416.0 345 63.2
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 5.6e-114 415.2 373 61.1
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 7.3e-114 414.8 379 59.1
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.6e-113 413.7 376 58.0
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 2.8e-113 412.9 387 58.7
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 1.4e-112 410.6 397 56.7
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 1.4e-112 410.6 314 67.5
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 2.3e-112 409.8 345 61.7
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 3.1e-112 409.5 395 56.7
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 3.1e-112 409.5 364 59.3
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 8.9e-112 407.9 389 57.6
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.2e-111 407.5 378 58.7
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 5.8e-111 405.2 398 54.3
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 7.5e-111 404.8 347 59.4
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 9.8e-111 404.4 377 58.4
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 1.3e-110 404.1 336 62.5
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 1.7e-110 403.7 342 60.2
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 4.9e-110 402.1 394 56.6
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 6.4e-110 401.7 380 57.4
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 8.3e-110 401.4 336 62.5
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 1.1e-109 401.0 343 61.5
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.9e-109 400.2 385 57.4
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.9e-109 400.2 385 57.4
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 4.1e-109 399.1 398 54.3
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 9.2e-109 397.9 332 61.1
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.6e-108 397.1 306 65.7
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.7e-108 396.4 405 54.1
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 7.8e-108 394.8 333 61.6
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 1.0e-107 394.4 383 57.2
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 3.9e-107 392.5 368 56.2
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 5.1e-107 392.1 336 59.8
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.1e-106 391.0 358 57.5
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.9e-106 390.2 392 54.3
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 3.3e-106 389.4 357 56.3
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 9.5e-106 387.9 345 57.1
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 2.8e-105 386.3 326 61.3
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 6.2e-105 385.2 325 60.6
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 8.1e-105 384.8 383 56.1
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.8e-104 383.6 383 55.9
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 1.8e-104 383.6 321 60.1
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 2.3e-104 383.3 329 59.0
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 8.9e-104 381.3 354 60.7
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.9e-101 373.6 329 59.3
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 8.6e-99 364.8 348 63.2
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 1.5e-98 364.0 339 59.6
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 1.9e-98 363.6 364 55.8
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 9.6e-98 361.3 306 59.8
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 4.0e-96 355.9 346 57.5
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.2e-95 354.4 256 69.1
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 4.4e-95 352.4 395 51.9
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 9.9e-95 351.3 313 61.3
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 9.3e-93 344.7 395 51.4
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 8.7e-91 338.2 323 57.9
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 2.5e-90 336.7 230 74.3
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.6e-89 334.0 387 48.6
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 4.8e-89 332.4 245 68.6
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 6.2e-89 332.0 371 53.6
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 3.1e-88 329.7 303 53.8
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.8e-86 322.8 320 54.1
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 2.1e-84 317.0 336 47.6
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 2.1e-84 317.0 325 54.8
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 2.3e-83 313.5 285 61.1
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 4.3e-82 309.3 375 44.0
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 1.9e-77 293.9 326 54.0
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 7.4e-74 282.0 261 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.6e-73 280.8 272 48.9
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 4.5e-71 272.7 197 70.1
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 2.1e-65 253.8 248 55.6
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 1.1e-64 251.5 268 54.9
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 6.9e-64 248.8 185 65.9
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 7.2e-61 238.8 229 56.8
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 4.6e-60 236.1 246 56.1
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 6.7e-59 232.3 201 60.7
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 2.4e-56 223.8 159 72.3
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 9.0e-56 221.9 200 62.0
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 1.1e-53 214.9 304 38.2
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 3.7e-49 199.9 211 58.8
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 3.6e-44 183.3 280 37.9
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.8e-40 171.0 292 33.6
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.2e-38 164.1 137 60.6
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 4.5e-31 139.8 224 46.0
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 1.3e-25 121.7 105 57.1
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 4.5e-23 113.2 84 73.8
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.8e-22 110.2 84 70.2
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 2.1e-20 104.4 240 33.3
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.4e-16 91.7 125 48.0
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.2e-12 78.6 62 59.7
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 2.7e-07 60.8 45 68.9


User provided reference genes

Program Settings