Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 1.1e-181 639.8 323 100.0
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 1.5e-178 629.4 323 98.5
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 1.3e-174 616.3 323 95.7
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 3.0e-174 615.1 322 95.7
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 1.2e-159 566.6 348 85.3
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 6.0e-159 564.3 290 97.6
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 5.4e-152 541.2 288 93.8
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 3.5e-151 538.5 322 82.3
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 7.4e-149 530.8 324 80.9
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 9.6e-149 530.4 325 81.5
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.4e-147 526.6 324 79.6
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 2.4e-147 525.8 321 81.6
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 5.3e-147 524.6 323 81.1
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 1.5e-146 523.1 323 79.9
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 9.9e-146 520.4 320 79.7
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 1.3e-145 520.0 323 79.9
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 2.7e-143 512.3 320 78.8
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 1.3e-142 510.0 320 78.1
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.8e-142 509.6 311 80.7
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 6.7e-142 507.7 334 76.9
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.5e-141 505.8 325 78.2
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 4.3e-141 505.0 326 77.6
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 1.3e-140 503.4 320 76.9
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 1.3e-140 503.4 316 79.1
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 2.4e-139 499.2 326 77.6
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 3.1e-139 498.8 326 77.0
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 5.3e-139 498.0 319 76.2
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 5.8e-138 494.6 317 76.7
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 1.0e-137 493.8 325 77.2
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 4.9e-137 491.5 325 76.3
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 6.5e-137 491.1 339 74.6
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.1e-136 490.3 328 75.6
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 5.5e-136 488.0 325 74.8
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 5.5e-136 488.0 317 77.0
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.6e-135 486.5 317 76.3
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 2.7e-135 485.7 315 75.9
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 4.6e-135 485.0 325 74.5
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 7.9e-135 484.2 319 75.2
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 1.3e-134 483.4 326 76.4
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.9e-134 481.9 345 71.9
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 8.7e-134 480.7 328 73.8
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 8.7e-134 480.7 317 74.4
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.5e-133 479.9 324 74.7
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.9e-133 479.6 317 74.8
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 2.5e-133 479.2 317 71.0
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 3.3e-133 478.8 313 74.1
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.3e-133 478.8 316 75.9
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 5.7e-133 478.0 313 76.0
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 7.4e-133 477.6 320 73.8
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 7.4e-133 477.6 322 74.5
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 9.6e-133 477.2 362 68.0
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 3.7e-132 475.3 384 65.1
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 6.3e-132 474.6 314 75.5
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.8e-131 473.0 320 73.1
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 1.8e-131 473.0 320 73.1
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 2.4e-131 472.6 332 71.1
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 4.1e-131 471.9 325 72.9
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 6.9e-131 471.1 319 72.7
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 2.0e-130 469.5 326 71.5
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 3.4e-130 468.8 316 74.7
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 4.5e-130 468.4 314 73.9
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.7e-129 466.5 326 73.6
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 1.7e-129 466.5 310 75.2
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 2.9e-129 465.7 325 73.2
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 3.8e-129 465.3 316 73.4
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 3.8e-129 465.3 325 71.1
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 5.0e-129 464.9 314 74.2
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 1.1e-128 463.8 314 73.6
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 1.4e-128 463.4 314 73.6
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.4e-128 463.4 325 72.9
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 1.9e-128 463.0 377 65.8
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 4.2e-128 461.8 317 75.1
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 7.2e-128 461.1 314 72.0
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.2e-128 461.1 343 69.7
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 7.2e-128 461.1 314 73.2
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 1.2e-127 460.3 314 73.2
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 1.2e-127 460.3 314 73.2
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 1.2e-127 460.3 325 71.4
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 1.6e-127 459.9 314 72.6
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 4.6e-127 458.4 323 69.0
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 1.3e-126 456.8 316 71.8
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 1.8e-126 456.4 320 71.9
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 2.3e-126 456.1 315 72.4
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 3.0e-126 455.7 351 66.7
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 3.9e-126 455.3 327 70.3
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 1.9e-125 453.0 306 74.2
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 2.5e-125 452.6 314 72.0
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 3.3e-125 452.2 357 66.1
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 4.3e-125 451.8 323 70.0
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 1.6e-124 449.9 281 79.0
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 2.2e-124 449.5 321 71.3
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 2.8e-124 449.1 320 68.1
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.5e-122 443.4 317 70.3
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 2.0e-122 443.0 315 70.8
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 3.8e-121 438.7 317 71.6
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.1e-120 437.2 324 70.7
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 4.2e-120 435.3 307 69.7
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 1.8e-118 429.9 316 67.7
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 3.0e-118 429.1 254 82.3
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 3.0e-118 429.1 329 68.1
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 2.6e-117 426.0 258 82.2
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 1.4e-115 420.2 265 76.2
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 4.1e-115 418.7 277 76.2
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 2.9e-113 412.5 252 79.4
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 8.0e-103 377.9 306 61.8
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.7e-100 370.2 317 59.0
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 2.8e-100 369.4 256 73.0
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 1.8e-99 366.7 330 56.1
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 8.8e-94 347.8 196 85.7
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 3.4e-93 345.9 257 65.8
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 2.7e-90 336.3 306 59.5
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 8.6e-89 331.3 288 61.8
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.5e-88 330.5 292 62.0
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 2.5e-88 329.7 327 57.5
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 9.5e-88 327.8 205 75.1
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 6.8e-86 321.6 326 54.9
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 1.1e-83 314.3 284 57.7
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 1.2e-82 310.8 334 50.3
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 2.8e-79 299.7 198 75.8
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 2.9e-76 289.7 176 78.4
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 7.0e-75 285.0 233 63.5
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.0e-73 281.2 325 48.9
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 6.8e-70 268.5 186 72.0
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 4.1e-67 259.2 350 40.3
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 9.2e-67 258.1 185 70.8
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 2.3e-65 253.4 198 69.2
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 4.0e-62 242.7 164 73.8
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 4.4e-61 239.2 343 41.4
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 6.0e-58 228.8 132 83.3
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.6e-55 219.5 200 59.5
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 5.8e-53 212.2 353 40.2
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.7e-52 210.7 150 72.0
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.7e-50 203.4 285 39.6
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.9e-49 199.5 124 76.6
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 6.6e-49 198.7 125 74.4
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.3e-48 196.4 121 75.2
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 2.1e-47 193.7 255 43.1
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 6.2e-47 192.2 151 66.2
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.3e-41 174.5 359 34.3
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 3.5e-34 149.8 129 60.5
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 3.0e-33 146.7 111 65.8
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.6e-31 141.0 315 34.9
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 1.1e-27 128.3 129 55.8
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 9.3e-27 125.2 83 79.5
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 6.7e-25 119.0 69 82.6
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 1.8e-22 110.9 84 70.2
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 1.1e-19 101.7 80 62.5
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 1.0e-17 95.1 73 68.5
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.6e-10 71.2 41 80.5


User provided reference genes

Program Settings