Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.6e-85 318.2 156 100.0
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 7.8e-72 273.9 157 87.9
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 7.3e-62 240.7 171 76.6
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.3e-58 229.9 187 69.0
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.9e-57 226.1 177 69.5
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.3e-50 203.4 180 62.8
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.7e-50 203.0 181 63.0
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.2e-50 202.6 185 63.2
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 2.4e-49 199.1 183 61.7
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.2e-48 196.8 191 60.7
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.5e-48 195.3 187 60.4
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.0e-48 194.5 186 61.3
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.5e-46 189.9 192 58.3
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.5e-46 189.1 186 58.6
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.5e-43 178.3 170 59.4
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.0e-39 167.2 176 54.5
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.3e-39 166.0 176 55.1
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.5e-38 163.3 175 53.7
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.5e-38 162.5 174 52.3
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.3e-37 160.2 161 55.9
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.6e-37 159.8 168 53.6
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.1e-36 157.1 174 53.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.4e-36 156.8 172 52.9
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 2.4e-36 156.0 167 52.7
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 6.9e-36 154.5 169 52.7
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 4.5e-35 151.8 169 52.7
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.3e-34 150.2 168 51.2
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.3e-34 150.2 152 53.3
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.7e-34 149.8 172 50.6
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.2e-34 149.4 167 49.1
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.9e-34 149.1 169 52.1
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 3.8e-34 148.7 170 50.6
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.1e-33 147.1 176 49.4
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-33 146.4 170 50.0
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 2.5e-33 146.0 163 52.1
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.2e-32 143.7 165 49.7
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.6e-32 143.3 171 50.9
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-32 142.5 170 48.8
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 3.6e-32 142.1 169 45.6
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.6e-32 142.1 183 43.7
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 7.9e-32 141.0 166 51.2
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.0e-31 140.6 177 45.8
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.4e-31 140.2 165 49.7
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.4e-31 140.2 169 47.3
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.4e-31 140.2 166 51.2
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.4e-31 140.2 167 48.5
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 3.0e-31 139.0 211 45.0
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.1e-31 138.3 193 47.7
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 5.1e-31 138.3 183 46.4
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.1e-31 138.3 165 48.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 6.7e-31 137.9 190 49.5
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 8.8e-31 137.5 171 45.0
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 8.8e-31 137.5 163 48.5
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.1e-30 137.1 168 48.2
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-30 137.1 169 44.4
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.5e-30 136.0 162 48.8
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.3e-30 135.6 167 46.7
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 4.3e-30 135.2 152 48.0
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 4.3e-30 135.2 178 45.5
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 5.7e-30 134.8 172 44.8
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 5.7e-30 134.8 172 47.7
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.7e-30 134.8 157 49.7
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 7.4e-30 134.4 171 43.9
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 7.4e-30 134.4 180 43.3
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 9.7e-30 134.0 172 47.1
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 9.7e-30 134.0 179 44.1
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.7e-29 133.3 166 45.8
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.7e-29 133.3 168 45.2
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.7e-29 133.3 170 45.3
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.7e-29 133.3 179 46.9
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.2e-29 132.9 171 44.4
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 2.8e-29 132.5 171 43.9
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.8e-29 132.5 171 43.9
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.8e-29 132.5 175 45.1
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 4.8e-29 131.7 177 46.9
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 6.3e-29 131.3 168 46.4
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.3e-29 131.3 164 47.0
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.3e-29 131.3 173 46.2
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 6.3e-29 131.3 166 47.0
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 6.3e-29 131.3 178 46.1
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 6.3e-29 131.3 194 43.3
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 8.2e-29 131.0 167 48.5
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 8.2e-29 131.0 143 55.2
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-28 130.2 168 46.4
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.4e-28 130.2 168 46.4
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.4e-28 130.2 163 51.5
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.4e-28 130.2 158 46.8
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.4e-28 130.2 148 52.0
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.8e-28 129.8 169 45.6
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.8e-28 129.8 169 45.6
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 3.1e-28 129.0 170 44.1
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 4.1e-28 128.6 168 48.8
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 4.1e-28 128.6 168 47.6
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.3e-28 128.3 184 42.4
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.2e-27 127.1 158 45.6
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 1.5e-27 126.7 171 42.7
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.6e-27 125.9 184 44.0
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.6e-27 125.9 172 42.4
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.4e-27 125.6 170 44.1
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.5e-27 125.2 184 42.4
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.5e-27 125.2 184 42.4
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 5.9e-27 124.8 168 46.4
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.7e-26 123.2 183 42.6
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.7e-26 123.2 182 43.4
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.7e-26 123.2 160 42.5
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.7e-26 123.2 176 43.2
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 5.0e-26 121.7 176 45.5
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.0e-26 121.7 171 46.2
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 8.5e-26 120.9 178 43.3
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 8.5e-26 120.9 182 42.3
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.9e-25 119.8 170 43.5
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.5e-25 119.4 164 45.1
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.5e-25 119.4 170 42.4
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-25 119.0 154 46.1
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 4.2e-25 118.6 186 41.4
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.2e-25 118.6 186 41.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.2e-25 118.6 186 41.4
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 4.2e-25 118.6 175 40.6
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.2e-24 117.1 174 46.0
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.6e-24 116.7 180 41.1
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.6e-24 115.5 176 42.0
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 4.7e-24 115.2 167 43.1
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 4.7e-24 115.2 174 40.8
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 4.7e-24 115.2 178 39.9
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 6.1e-24 114.8 185 43.8
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 7.9e-24 114.4 185 40.0
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.0e-23 114.0 163 42.9
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.0e-23 114.0 185 40.5
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.4e-23 113.6 169 43.8
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.4e-23 113.6 162 45.1
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.8e-23 113.2 162 42.6
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 3.9e-23 112.1 178 39.3
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 3.9e-23 112.1 178 39.3
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 3.9e-23 112.1 178 39.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.9e-23 112.1 172 41.3
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 6.7e-23 111.3 179 39.7
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 8.8e-23 110.9 176 39.2
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 8.8e-23 110.9 155 45.8
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.4e-22 108.6 177 40.1
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.7e-22 108.2 144 44.4
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.7e-22 108.2 170 41.2
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 7.4e-22 107.8 172 41.3
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.7e-21 106.7 177 41.8
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.4e-20 102.8 122 45.9
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.5e-19 100.1 151 43.7
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.6e-19 99.4 134 47.0
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-19 99.0 134 45.5
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.7e-18 96.7 144 43.8
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.7e-18 96.7 158 40.5
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.1e-16 88.2 152 39.5
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.4e-15 87.0 211 32.2
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-14 83.2 99 46.5
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.3e-14 82.4 136 41.9
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.3e-13 80.5 172 33.1
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.7e-13 80.1 160 37.5
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.2e-13 79.7 116 40.5
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-13 79.0 102 48.0
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 6.3e-13 78.2 68 64.7
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.3e-12 75.1 127 43.3
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 9.1e-12 74.3 155 30.3
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.0e-11 73.2 120 42.5
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.6e-11 72.8 87 44.8
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.5e-11 72.0 137 38.0
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.9e-11 71.6 102 43.1
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 5.9e-11 71.6 111 38.7
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 1.3e-10 70.5 119 35.3
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 1.7e-10 70.1 163 35.0
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 3.8e-10 68.9 212 28.3
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 8.5e-10 67.8 168 31.0
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.5e-09 67.0 86 51.2
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.5e-09 67.0 198 30.3
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 7.2e-09 64.7 169 31.4
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 9.4e-09 64.3 164 31.7
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.4e-07 60.5 204 29.4
ATR0580G176 Amborella trichopoda HOM05D003790 ORTHO05D004481 4.0e-07 58.9 102 37.3
SEGI_15239 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.0e-07 58.9 180 31.1
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 5.2e-07 58.5 190 30.5
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.2e-06 57.4 188 29.3
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-06 57.0 60 51.7


User provided reference genes

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