Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.5e-90 334.7 189 100.0
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.4e-83 313.2 189 96.3
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.0e-82 309.3 189 84.1
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 3.8e-73 278.5 196 74.5
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.2e-63 246.9 189 72.0
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 6.6e-57 224.6 202 66.8
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.5e-56 222.6 192 64.6
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 9.5e-56 220.7 196 63.3
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 9.5e-56 220.7 197 65.0
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.6e-55 218.8 196 70.4
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.2e-55 218.0 195 69.2
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.1e-54 217.2 195 61.5
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 9.2e-51 204.1 181 63.0
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 4.6e-50 201.8 175 67.4
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.6e-47 193.4 186 59.1
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 8.4e-44 181.0 182 58.2
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.1e-43 180.6 190 53.2
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.9e-43 179.9 190 53.2
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.1e-42 176.4 182 63.2
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.7e-42 176.0 181 53.0
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 3.3e-40 169.1 182 50.5
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.2e-39 167.2 187 51.9
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.6e-39 166.8 187 52.4
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 6.9e-38 161.4 174 55.2
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 1.5e-37 160.2 179 48.6
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.0e-37 159.8 192 46.4
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.6e-37 159.5 179 51.4
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 2.6e-37 159.5 182 50.0
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 4.4e-37 158.7 182 49.5
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 4.4e-37 158.7 186 47.8
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 7.6e-37 157.9 174 51.1
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 9.9e-37 157.5 179 49.2
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.3e-36 157.1 171 51.5
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 2.9e-36 156.0 214 44.4
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 2.9e-36 156.0 191 46.1
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 3.8e-36 155.6 194 47.4
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 6.4e-36 154.8 186 47.3
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.4e-35 153.7 191 58.1
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.4e-35 153.7 188 44.7
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 2.4e-35 152.9 184 47.8
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.2e-35 152.5 187 48.1
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 4.2e-35 152.1 172 49.4
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 4.2e-35 152.1 176 50.0
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 4.2e-35 152.1 181 48.6
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.2e-34 150.6 182 48.4
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 1.6e-34 150.2 198 56.1
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 4.6e-34 148.7 186 44.6
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 7.8e-34 147.9 185 49.2
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-33 147.5 185 47.0
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 2.3e-33 146.4 176 48.3
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-33 146.0 185 46.5
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 3.0e-33 146.0 174 48.3
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.1e-33 145.2 180 45.6
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 5.1e-33 145.2 184 46.7
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 5.1e-33 145.2 191 45.0
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 6.6e-33 144.8 179 52.0
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.7e-33 144.4 182 45.1
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.1e-32 144.1 191 44.0
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.1e-32 144.1 181 53.0
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.1e-32 144.1 178 46.6
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.5e-32 143.7 179 49.7
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.9e-32 143.3 189 44.4
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 3.3e-32 142.5 187 46.5
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 4.3e-32 142.1 180 44.4
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 4.3e-32 142.1 182 45.1
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.3e-32 141.4 198 42.9
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 9.6e-32 141.0 181 43.6
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.3e-31 140.6 198 43.4
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-31 139.8 181 46.4
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 2.1e-31 139.8 181 43.1
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.6e-31 139.0 198 42.9
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 4.8e-31 138.7 184 47.8
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 6.2e-31 138.3 177 53.1
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 8.1e-31 137.9 178 49.4
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 8.1e-31 137.9 174 46.0
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 8.1e-31 137.9 191 42.4
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.1e-30 137.5 197 44.7
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-30 137.1 180 43.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.4e-30 137.1 180 43.9
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.4e-30 137.1 180 43.9
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.4e-30 137.1 182 43.4
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 2.4e-30 136.3 195 42.1
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 6.9e-30 134.8 181 42.5
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 9.0e-30 134.4 183 43.2
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-29 134.0 179 41.9
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.2e-29 134.0 198 42.9
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-29 134.0 203 40.9
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-29 134.0 198 42.9
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-29 134.0 198 42.9
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-29 133.7 181 41.4
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.5e-29 133.7 193 42.0
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 2.0e-29 133.3 181 42.5
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 2.6e-29 132.9 179 41.3
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 3.4e-29 132.5 179 49.7
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 3.4e-29 132.5 179 45.3
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 5.8e-29 131.7 179 42.5
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 5.8e-29 131.7 179 42.5
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 5.8e-29 131.7 197 40.6
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 5.8e-29 131.7 184 42.9
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 9.9e-29 131.0 173 41.0
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 9.9e-29 131.0 188 41.0
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.3e-28 130.6 177 42.4
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-28 130.6 182 43.4
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.9e-28 129.4 183 42.1
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 3.8e-28 129.0 179 41.9
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 3.8e-28 129.0 179 41.9
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 3.8e-28 129.0 180 44.4
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.9e-28 128.6 184 44.6
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-27 127.5 177 44.1
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.1e-27 127.5 185 44.9
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.9e-27 126.7 183 41.0
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.9e-27 126.7 172 43.0
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.9e-27 126.7 182 41.2
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 9.3e-27 124.4 182 40.7
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 9.3e-27 124.4 185 41.1
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 9.3e-27 124.4 181 46.4
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 2.1e-26 123.2 185 40.5
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 2.7e-26 122.9 192 46.9
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.7e-26 122.9 177 46.3
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.6e-26 122.1 188 44.1
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 6.0e-26 121.7 186 40.3
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.9e-26 121.3 186 39.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.3e-25 120.6 165 44.8
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.0e-25 119.4 103 54.4
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.9e-25 119.0 186 40.9
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 8.7e-25 117.9 190 38.4
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-24 117.5 189 38.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 2.5e-24 116.3 173 42.2
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 4.3e-24 115.5 189 38.6
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.6e-23 113.6 198 37.4
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 2.8e-23 112.8 173 41.6
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 4.8e-23 112.1 189 39.7
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 8.1e-23 111.3 188 37.2
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-22 110.9 163 42.9
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.8e-22 110.2 189 37.6
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.8e-22 110.2 169 43.8
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.4e-22 109.8 189 37.6
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 4.0e-22 109.0 179 40.2
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 6.9e-22 108.2 190 37.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.5e-21 107.1 180 40.6
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 3.4e-21 105.9 177 48.0
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 5.8e-21 105.1 190 36.8
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 5.8e-21 105.1 190 36.8
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 5.8e-21 105.1 190 36.8
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-20 104.0 173 40.5
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.7e-20 103.6 182 39.6
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.2e-20 103.2 99 55.6
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-19 99.8 178 38.2
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 6.0e-18 95.1 175 37.7
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-17 93.2 147 41.5
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.1e-16 90.9 180 41.1
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.5e-16 89.7 95 51.6
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 5.6e-16 88.6 206 34.5
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 7.4e-16 88.2 206 37.9
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 7.4e-16 88.2 106 42.5
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.1e-15 86.7 150 41.3
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.8e-15 86.3 112 42.9
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-14 83.2 91 50.5
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.2e-13 80.9 91 49.5
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.2e-13 80.9 211 32.2
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.6e-13 78.2 91 50.5
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.3e-12 77.4 214 40.7
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 2.2e-12 76.6 170 35.3
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 6.5e-12 75.1 174 34.5
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 8.4e-12 74.7 191 29.8
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 1.9e-11 73.6 199 42.7
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 2.5e-11 73.2 178 29.2
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 4.6e-10 68.9 155 31.6
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.6e-10 68.9 65 55.4
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.6e-10 68.9 92 42.4
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 6.1e-10 68.6 65 61.5
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.0e-09 67.8 205 29.8
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.1e-08 64.3 157 35.0
TAR629G3365 Trochodendron aralioides HOM05D001131 ORTHO05D000972 2.5e-08 63.2 193 28.0
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.3e-08 62.8 175 30.9
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 3.3e-08 62.8 188 28.7
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.3e-08 62.4 45 64.4
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.4e-08 61.6 58 46.6
GSVIVG01032948001 Vitis vinifera HOM05D001131 ORTHO05D000972 1.8e-06 57.0 199 26.6
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 4.1e-06 55.8 138 39.9
Sed0010143 Sechium edule HOM05D001131 ORTHO05D000972 6.9e-06 55.1 205 25.4


User provided reference genes

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