Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 5.7e-156 554.3 299 100.0
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 3.6e-142 508.4 278 98.6
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.2e-140 503.4 278 98.2
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.5e-127 459.1 282 84.0
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 4.7e-126 454.9 278 86.7
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.1e-122 443.7 245 91.0
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 3.2e-122 442.2 244 90.6
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.5e-90 336.3 244 72.5
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 4.2e-90 335.5 247 70.4
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.9e-88 328.9 244 70.9
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.1e-87 327.4 247 69.2
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.5e-87 326.2 247 68.8
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.7e-86 323.6 243 70.8
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.7e-86 323.6 246 69.9
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 2.2e-86 323.2 244 70.5
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 6.9e-85 318.2 249 68.7
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 9.1e-85 317.8 245 68.2
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.1e-85 317.8 245 68.2
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.1e-85 317.8 245 68.2
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.6e-84 316.2 249 68.3
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 5.9e-84 315.1 279 64.9
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-83 314.3 245 67.8
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 2.2e-83 313.2 249 67.9
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 2.2e-83 313.2 248 68.5
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 2.2e-83 313.2 247 68.0
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 2.2e-83 313.2 247 67.6
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.9e-83 312.8 245 67.3
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 7.2e-82 308.1 223 71.3
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 9.4e-82 307.8 249 67.5
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.6e-81 307.0 247 67.2
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 2.1e-81 306.6 246 68.7
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 3.6e-81 305.8 244 68.9
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 4.7e-81 305.4 246 67.9
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 4.7e-81 305.4 269 63.6
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 1.0e-80 304.3 243 67.1
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.4e-80 303.9 243 66.7
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 1.4e-80 303.9 248 67.7
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.8e-80 303.5 292 59.6
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 2.3e-80 303.1 244 64.8
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.5e-79 300.4 247 64.8
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 2.0e-79 300.1 246 64.2
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 2.0e-79 300.1 246 65.0
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 2.6e-79 299.7 255 65.1
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 4.4e-79 298.9 286 59.1
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 7.4e-79 298.1 213 74.2
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.7e-78 297.0 249 65.5
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.1e-77 294.3 248 64.9
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 5.3e-77 292.0 249 65.9
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 7.0e-77 291.6 244 64.3
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.2e-76 290.8 248 64.5
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 2.6e-76 289.7 245 62.9
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 4.5e-76 288.9 255 66.7
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 5.9e-76 288.5 249 64.7
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 7.7e-76 288.1 288 58.3
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.0e-75 287.7 244 63.5
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.0e-75 287.7 248 63.3
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 1.7e-75 287.0 248 63.7
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 2.2e-75 286.6 254 61.4
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.9e-74 283.5 248 64.5
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 1.2e-73 280.8 223 68.6
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.0e-72 277.7 246 63.0
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.0e-72 276.2 248 63.3
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 1.3e-70 270.8 213 68.1
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 8.2e-70 268.1 223 66.8
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.1e-69 267.7 274 57.7
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.1e-69 267.7 290 54.8
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 7.0e-69 265.0 230 62.6
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.6e-68 263.1 230 61.7
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.0e-67 261.2 248 62.1
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 3.8e-67 259.2 213 66.7
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 5.0e-67 258.8 213 66.2
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.5e-67 258.5 230 61.7
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 1.6e-65 253.8 247 60.7
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 4.7e-65 252.3 256 56.6
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 8.0e-65 251.5 256 56.2
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 4.0e-64 249.2 266 57.1
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 6.7e-64 248.4 237 61.2
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 1.2e-63 247.7 252 57.1
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 4.4e-63 245.7 246 59.3
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 2.8e-62 243.0 248 58.5
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.9e-59 233.0 218 59.6
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 5.0e-59 232.3 247 57.9
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 8.5e-59 231.5 190 68.4
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.9e-58 230.3 222 59.9
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.2e-58 229.2 188 66.5
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 7.2e-58 228.4 402 40.8
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.6e-57 227.3 203 63.1
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.1e-57 226.9 203 62.6
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 1.0e-56 224.6 183 68.9
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.4e-56 224.2 251 55.4
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.8e-56 223.8 214 60.7
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.8e-56 223.8 203 61.1
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 3.0e-56 223.0 250 54.8
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 8.8e-56 221.5 248 55.6
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.3e-54 217.6 226 57.1
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 1.7e-54 217.2 201 61.2
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 1.1e-53 214.5 248 56.0
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.4e-53 214.2 218 60.1
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 5.4e-53 212.2 218 62.8
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 5.4e-53 212.2 218 62.8
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 5.4e-53 212.2 218 62.8
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 4.5e-52 209.1 186 66.1
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.9e-52 208.8 220 55.0
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 1.0e-51 208.0 186 65.6
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 3.8e-51 206.1 201 62.2
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 3.8e-51 206.1 195 61.0
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 8.6e-51 204.9 261 52.1
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 3.3e-50 203.0 189 60.8
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.1e-49 200.3 186 60.2
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.3e-46 188.7 243 51.0
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 1.2e-44 184.5 226 50.9
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 3.9e-43 179.5 259 44.4
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 7.3e-42 175.3 245 47.8
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 9.5e-42 174.9 183 55.2
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 9.2e-37 158.3 327 40.4
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 8.6e-35 151.8 158 60.8
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 4.4e-31 139.4 151 55.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 4.6e-28 129.4 126 59.5
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.6e-25 120.9 146 54.8
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 8.9e-24 115.2 203 45.3
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.5e-23 114.4 203 40.9
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.7e-22 110.9 227 39.6
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 4.6e-20 102.8 163 46.0
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.7e-19 100.9 61 75.4
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.3e-14 84.7 56 67.9
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.9e-13 80.9 54 68.5
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 1.6e-12 77.8 135 47.4
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 4.6e-12 76.3 149 40.3
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 3.0e-11 73.6 54 63.0
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.9e-06 56.2 78 50.0
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 6.4e-06 55.8 49 63.3


User provided reference genes

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