Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 0.0e+00 1503.0 783 100.0
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 0.0e+00 1472.2 783 98.1
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 0.0e+00 1391.7 793 92.8
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 0.0e+00 1159.1 793 79.7
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 8.8e-281 970.3 829 67.3
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 3.8e-276 954.9 796 68.5
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 3.6e-258 895.2 851 62.2
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 4.5e-99 366.7 596 41.9
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.4e-89 335.1 828 35.3
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 3.0e-79 300.8 827 33.9
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 6.7e-79 299.7 847 32.0
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.1e-78 298.9 804 33.5
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 5.7e-78 296.6 837 31.8
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 5.9e-75 286.6 840 33.0
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 1.7e-74 285.0 802 31.9
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 8.5e-74 282.7 829 31.7
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.2e-72 278.9 816 30.6
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.8e-68 265.0 801 31.0
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 4.1e-68 263.8 888 30.1
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 5.3e-68 263.5 894 31.1
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 5.3e-68 263.5 822 31.9
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.0e-67 261.5 827 30.4
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 2.0e-67 261.5 865 29.5
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 5.9e-67 260.0 850 30.1
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.7e-66 258.5 820 30.2
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 6.5e-66 256.5 815 31.5
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 6.1e-64 250.0 849 29.7
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.3e-63 248.1 833 30.0
PGSC0003DMG400031489 Solanum tuberosum HOM05D005434 ORTHO05D006412 3.0e-63 247.7 158 81.6
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 5.1e-63 246.9 853 30.0
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 5.1e-63 246.9 827 29.4
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.5e-62 245.4 825 31.5
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 2.6e-62 244.6 726 32.0
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 9.7e-62 242.7 829 30.3
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 9.7e-62 242.7 897 28.8
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 1.7e-61 241.9 821 30.2
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 2.2e-61 241.5 880 28.9
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 2.2e-61 241.5 829 30.2
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 6.3e-61 240.0 892 29.4
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 8.2e-61 239.6 821 29.4
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.1e-60 239.2 817 29.4
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 3.1e-60 237.7 792 30.6
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 6.9e-60 236.5 801 29.5
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 9.1e-60 236.1 783 30.0
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.5e-59 235.3 894 29.0
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 2.6e-59 234.6 796 31.5
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 4.5e-59 233.8 766 30.0
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 4.5e-59 233.8 848 28.9
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.0e-58 232.6 880 28.8
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 1.3e-58 232.3 803 29.6
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 6.5e-58 229.9 828 30.4
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 1.1e-57 229.2 794 29.5
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.1e-57 229.2 819 29.3
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 2.5e-57 228.0 812 30.3
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 3.2e-57 227.6 822 29.4
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 3.2e-57 227.6 898 28.0
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 2.1e-56 224.9 931 27.5
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 2.7e-56 224.6 889 28.6
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.0e-55 222.6 864 28.0
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.0e-55 222.6 805 28.9
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.0e-55 221.1 880 29.2
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 6.7e-55 219.9 819 28.6
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 3.3e-54 217.6 819 28.8
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 4.4e-54 217.2 917 27.7
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 6.3e-53 213.4 623 31.8
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.4e-52 212.2 824 28.4
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 1.4e-52 212.2 901 27.6
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.4e-52 211.5 969 28.3
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 9.1e-52 209.5 818 28.6
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 4.5e-51 207.2 818 29.7
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 1.0e-50 206.1 819 28.1
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 1.2e-48 199.1 799 28.3
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.6e-48 198.7 823 28.4
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 2.7e-48 198.0 835 28.0
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 4.7e-48 197.2 782 28.0
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 6.1e-48 196.8 855 27.5
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 8.0e-48 196.4 854 28.0
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 3.0e-47 194.5 751 28.2
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 4.0e-47 194.1 856 27.7
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 5.2e-47 193.7 860 27.7
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 5.7e-46 190.3 788 28.4
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 9.7e-46 189.5 170 57.1
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.8e-45 188.0 841 27.3
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 2.8e-45 188.0 910 26.6
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 5.3e-44 183.7 204 49.0
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 7.0e-44 183.3 577 32.2
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 7.7e-43 179.9 765 26.7
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 1.3e-42 179.1 763 29.2
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 5.2e-39 167.2 792 28.7
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.5e-38 165.6 840 26.0
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 7.5e-38 163.3 800 26.4
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 9.8e-38 162.9 785 27.4
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 7.7e-35 153.3 923 25.4
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.1e-32 145.2 140 52.9
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 6.8e-31 140.2 137 48.9
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.6e-30 138.3 167 44.3
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 4.4e-30 137.5 835 25.1
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.3e-29 136.0 775 26.5
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 9.2e-28 129.8 87 79.3
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.5e-25 121.7 576 27.3
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 4.3e-25 120.9 365 29.3
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 5.6e-25 120.6 107 57.9
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 1.0e-23 116.3 510 28.2
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.3e-23 115.2 148 43.2
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 5.2e-23 114.0 550 25.8
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 6.8e-23 113.6 453 29.1
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.6e-22 111.7 601 27.5
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 4.4e-22 110.9 539 25.8
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 4.4e-22 110.9 876 23.5
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 2.9e-21 108.2 155 38.1
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.4e-20 105.9 99 52.5
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.5e-17 95.9 582 26.8
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.3e-17 94.7 630 27.6
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.1e-15 89.7 604 26.2
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.3e-13 82.8 636 23.6
PGSC0003DMG400033862 Solanum tuberosum HOM05D005434 ORTHO05D006412 3.7e-13 81.3 43 93.0
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 1.9e-12 79.0 165 35.8
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 7.0e-12 77.0 169 40.2
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 1.3e-10 72.8 255 29.0
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 3.3e-09 68.2 97 45.4
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 1.6e-08 65.9 174 25.9
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.8e-08 65.1 85 41.2
unitig_52.g16899 Utricularia gibba HOM05D005434 ORTHO05D006412 6.2e-08 63.9 125 35.2
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 3.4e-06 58.2 108 34.3
HanXRQChr10g0286491 Helianthus annuus HOM05D005434 ORTHO05D006412 5.8e-06 57.4 269 26.4
SMO367G0284 Selaginella moellendorffii HOM05D022252 ORTHO05D006993 9.9e-06 56.6 173 26.0


User provided reference genes

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