Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 1.6e-123 446.0 214 100.0
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 3.0e-114 415.2 215 94.0
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 2.4e-108 395.6 209 92.3
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 1.4e-100 369.8 213 84.0
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 3.1e-95 352.1 214 79.0
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 7.6e-94 347.4 214 78.5
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 3.5e-62 242.3 204 56.9
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 3.8e-61 238.8 197 57.4
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 1.5e-60 236.9 198 56.6
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 7.2e-60 234.6 215 59.5
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 9.4e-60 234.2 213 56.8
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 2.1e-59 233.0 198 54.0
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 4.0e-58 228.8 195 55.9
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 6.8e-58 228.0 196 55.6
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 2.0e-57 226.5 198 53.5
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 3.4e-57 225.7 198 52.5
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 7.5e-57 224.6 198 52.5
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 5.4e-55 218.4 198 52.0
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 1.2e-54 217.2 198 55.6
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 1.6e-54 216.9 198 53.5
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 2.0e-54 216.5 198 53.0
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 2.0e-54 216.5 198 53.0
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 2.2e-53 213.0 202 51.0
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 2.9e-53 212.6 194 52.1
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 3.8e-53 212.2 199 50.8
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 3.8e-53 212.2 199 50.8
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 6.5e-53 211.5 207 53.1
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 6.5e-53 211.5 205 49.8
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 6.5e-53 211.5 194 52.6
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 6.5e-53 211.5 199 51.3
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 8.5e-53 211.1 198 51.0
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 8.5e-53 211.1 198 50.5
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.5e-52 210.3 199 49.7
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.9e-52 209.9 205 46.8
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 2.5e-52 209.5 207 50.2
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 3.2e-52 209.1 198 54.5
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 3.2e-52 209.1 205 48.3
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 4.2e-52 208.8 200 49.0
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 4.2e-52 208.8 205 53.7
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 4.2e-52 208.8 199 48.7
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 5.5e-52 208.4 199 51.3
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 9.4e-52 207.6 197 50.3
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 3.6e-51 205.7 201 47.8
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 8.0e-51 204.5 209 47.4
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 1.0e-50 204.1 201 45.8
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 1.4e-50 203.8 198 50.5
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 1.8e-50 203.4 200 50.0
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.8e-50 203.4 202 46.0
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 2.3e-50 203.0 197 50.8
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.3e-50 203.0 205 47.8
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 2.3e-50 203.0 197 48.7
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 5.2e-50 201.8 202 49.0
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 6.8e-50 201.4 200 47.0
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 6.8e-50 201.4 198 50.0
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.2e-49 200.7 202 46.0
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.2e-49 200.7 200 47.0
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 2.0e-49 199.9 201 48.3
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 2.6e-49 199.5 201 50.7
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.6e-49 199.5 205 46.8
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 2.6e-49 199.5 200 45.5
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 3.4e-49 199.1 198 46.5
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.4e-49 198.7 210 47.1
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 4.4e-49 198.7 205 47.3
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 5.7e-49 198.4 206 46.6
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 9.8e-49 197.6 186 52.2
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.3e-48 197.2 199 48.7
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 1.3e-48 197.2 199 49.2
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.7e-48 196.8 200 49.0
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 2.8e-48 196.1 200 48.0
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.8e-48 196.1 205 46.8
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 2.8e-48 196.1 209 44.5
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 3.7e-48 195.7 209 45.0
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 6.3e-48 194.9 198 44.9
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 1.4e-47 193.7 227 42.7
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 1.4e-47 193.7 200 49.0
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 1.8e-47 193.4 211 49.8
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 3.1e-47 192.6 201 45.3
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.1e-47 192.6 200 48.0
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 3.1e-47 192.6 199 51.3
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 5.4e-47 191.8 201 47.3
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 2.7e-46 189.5 200 47.5
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 3.5e-46 189.1 197 47.2
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 7.7e-46 188.0 215 47.9
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 2.3e-45 186.4 200 46.5
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 2.3e-45 186.4 200 46.5
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 8.6e-45 184.5 200 46.5
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 1.5e-44 183.7 200 46.5
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 1.2e-38 164.1 200 44.0
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 8.9e-34 147.9 196 39.3
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 9.2e-31 137.9 208 35.6
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 1.0e-29 134.4 209 34.4
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 3.3e-28 129.4 206 35.0
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 9.5e-28 127.9 83 68.7
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 1.6e-27 127.1 191 38.2
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 5.4e-23 112.1 201 31.3
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 7.3e-20 101.7 116 44.0
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 2.8e-19 99.8 189 33.9
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 1.5e-17 94.0 116 42.2
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.7e-16 90.5 98 45.9
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.4e-16 88.6 72 52.8
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 1.1e-15 87.8 114 40.4
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.4e-15 86.7 54 64.8
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 9.2e-15 84.7 72 52.8
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 1.9e-07 60.5 61 45.9
SGA_v2.0_scaffold81G26073 Striga asiatica HOM05D006834 ORTHO05D008623 6.0e-06 55.5 56 50.0


User provided reference genes

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