Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 3.6e-230 801.2 398 100.0
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 2.6e-228 795.0 398 99.2
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 3.4e-212 741.5 398 92.2
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 5.1e-208 727.6 398 92.2
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 2.4e-202 708.8 378 93.4
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 5.6e-199 697.6 348 98.0
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 2.4e-197 692.2 378 90.7
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 1.2e-180 636.7 398 77.6
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 3.4e-180 635.2 367 83.1
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 4.5e-180 634.8 364 83.0
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 3.8e-179 631.7 362 82.6
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 4.9e-179 631.3 398 77.9
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 9.3e-178 627.1 398 76.6
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 9.3e-178 627.1 397 77.3
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 1.8e-176 622.9 398 77.4
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 3.3e-175 618.6 402 75.6
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 3.3e-175 618.6 382 78.0
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 5.6e-175 617.8 363 81.0
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 1.3e-174 616.7 398 75.4
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 1.3e-174 616.7 348 84.2
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.4e-173 613.2 398 75.6
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 1.8e-173 612.8 348 83.9
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 1.5e-172 609.8 380 78.7
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 3.4e-172 608.6 398 75.1
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 5.8e-172 607.8 348 83.9
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 5.8e-172 607.8 394 75.4
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 7.6e-172 607.4 401 74.3
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 7.6e-172 607.4 400 75.0
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 1.3e-171 606.7 371 79.8
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 1.3e-171 606.7 390 74.6
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 1.7e-171 606.3 380 78.7
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 2.2e-171 605.9 354 81.1
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 8.4e-171 604.0 375 77.3
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 2.5e-170 602.4 372 78.8
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 3.2e-170 602.1 354 80.8
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 3.2e-170 602.1 401 75.1
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 5.5e-170 601.3 398 74.9
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 7.1e-170 600.9 401 72.8
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 1.6e-169 599.7 378 76.7
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 4.6e-169 598.2 376 78.2
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 7.9e-169 597.4 398 74.4
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 2.3e-168 595.9 368 76.6
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 3.9e-168 595.1 399 74.7
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 3.9e-168 595.1 409 73.1
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 8.7e-168 594.0 388 75.0
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 8.7e-168 594.0 358 79.6
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 8.7e-168 594.0 347 80.7
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 7.4e-167 590.9 368 77.2
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 7.4e-167 590.9 389 74.6
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 7.4e-167 590.9 354 78.8
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 1.3e-166 590.1 403 72.5
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.6e-166 589.7 384 76.6
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 2.1e-166 589.3 368 76.9
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 3.7e-166 588.6 375 75.2
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 3.7e-166 588.6 350 80.0
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 4.8e-166 588.2 350 79.7
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 6.2e-166 587.8 374 77.0
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 8.2e-166 587.4 350 80.0
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 8.2e-166 587.4 370 77.0
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 8.2e-166 587.4 392 75.5
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 8.2e-166 587.4 372 76.9
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 1.1e-165 587.0 375 76.3
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 1.1e-165 587.0 389 74.6
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 1.4e-165 586.6 345 80.6
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 1.8e-165 586.3 345 80.3
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 2.4e-165 585.9 360 78.3
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 3.1e-165 585.5 374 76.5
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 4.0e-165 585.1 353 79.0
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 4.0e-165 585.1 335 83.3
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 4.0e-165 585.1 398 73.1
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 1.2e-164 583.6 390 72.1
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 1.2e-164 583.6 353 78.2
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 3.4e-164 582.0 351 79.5
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 4.5e-164 581.6 358 78.8
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 5.8e-164 581.3 365 76.4
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 5.8e-164 581.3 369 75.3
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 7.6e-164 580.9 358 78.2
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.7e-163 579.7 347 79.3
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.2e-163 579.3 368 76.1
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 2.9e-163 578.9 351 79.5
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 8.4e-163 577.4 358 78.2
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 8.4e-163 577.4 353 77.3
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 1.9e-162 576.2 350 78.3
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 4.2e-162 575.1 460 65.7
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 9.3e-162 573.9 353 76.8
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 1.2e-161 573.5 395 73.2
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.6e-161 573.2 364 74.5
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 3.5e-161 572.0 350 76.9
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 6.1e-161 571.2 327 82.6
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 8.7e-160 567.4 330 81.5
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 8.7e-160 567.4 330 81.8
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 5.7e-159 564.7 330 80.6
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 3.7e-158 562.0 319 83.7
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 6.3e-158 561.2 360 75.3
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 1.7e-155 553.1 364 72.3
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 2.2e-155 552.7 352 75.6
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 4.8e-150 535.0 327 78.6
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 3.1e-149 532.3 327 78.0
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 1.1e-143 513.8 393 65.6
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 9.7e-143 510.8 346 69.4
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 3.7e-142 508.8 387 67.4
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 3.1e-141 505.8 377 65.0
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 3.1e-141 505.8 334 71.6
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 3.2e-138 495.7 353 69.7
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 4.7e-137 491.9 330 69.7
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 1.6e-132 476.9 399 63.9
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 8.0e-129 464.5 368 65.2
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 1.0e-123 447.6 329 63.8
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 1.1e-122 444.1 375 62.1
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 4.4e-119 432.2 283 74.9
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 1.3e-118 430.6 398 56.3
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 9.5e-114 414.5 334 59.6
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 4.5e-108 395.6 256 74.6
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 4.5e-108 395.6 236 79.2
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 1.7e-107 393.7 288 68.8
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 2.3e-107 393.3 248 74.2
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 4.0e-104 382.5 327 58.7
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.1e-96 357.8 372 49.7
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.4e-69 267.7 287 46.0
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 4.0e-64 249.6 168 72.6
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 1.2e-60 238.0 165 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 1.3e-59 234.6 168 65.5
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 1.0e-46 191.8 163 61.3
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.7e-44 183.7 131 70.2
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 1.3e-14 85.1 59 76.3
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 3.8e-14 83.6 88 51.1
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 3.8e-14 83.6 88 51.1
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 1.3e-09 68.6 35 82.9


User provided reference genes

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