Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 7.7e-40 166.8 89 100.0
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 5.0e-39 164.1 89 97.8
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 7.4e-35 150.2 89 93.3
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.8e-25 119.0 82 85.4
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 1.8e-25 119.0 87 81.6
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.8e-25 119.0 82 79.3
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 4.5e-24 114.4 79 82.3
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 5.0e-23 110.9 80 76.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 8.5e-23 110.2 82 72.0
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.8e-20 102.4 84 69.0
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.1e-17 93.2 89 65.2
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.8e-17 92.4 61 78.7
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.8e-17 92.4 83 66.3
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.8e-17 92.4 66 74.2
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 3.1e-17 91.7 74 66.2
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 4.1e-17 91.3 69 72.5
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 9.1e-17 90.1 62 72.6
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.5e-16 88.2 73 68.5
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.5e-16 88.2 62 77.4
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 5.9e-16 87.4 64 76.6
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.3e-15 85.5 85 60.0
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.9e-15 85.1 84 58.3
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 3.8e-15 84.7 63 77.8
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.8e-15 84.7 64 71.9
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 3.8e-15 84.7 64 71.9
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 5.0e-15 84.3 66 69.7
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 5.0e-15 84.3 64 73.4
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 8.6e-15 83.6 85 62.4
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.6e-15 83.6 64 71.9
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 1.1e-14 83.2 66 71.2
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.5e-14 82.8 74 64.9
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.5e-14 82.0 64 71.9
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 2.5e-14 82.0 83 62.7
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.5e-14 82.0 64 70.3
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.3e-14 81.6 82 54.9
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.3e-14 81.6 82 54.9
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.3e-14 81.6 65 72.3
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 3.3e-14 81.6 73 61.6
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 4.2e-14 81.3 79 58.2
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 4.2e-14 81.3 64 67.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 5.5e-14 80.9 65 72.3
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 5.5e-14 80.9 69 68.1
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 7.2e-14 80.5 81 58.0
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 7.2e-14 80.5 68 67.6
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.5e-14 80.1 64 71.9
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-13 79.7 64 71.9
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 1.2e-13 79.7 66 68.2
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.6e-13 79.3 67 62.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.6e-13 79.3 65 70.8
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.6e-13 79.3 81 56.8
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.1e-13 79.0 68 61.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.1e-13 79.0 68 63.2
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.1e-13 79.0 70 61.4
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.6e-13 78.2 67 62.7
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 4.7e-13 77.8 66 66.7
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 4.7e-13 77.8 66 66.7
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 4.7e-13 77.8 66 66.7
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 4.7e-13 77.8 66 66.7
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 4.7e-13 77.8 66 66.7
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 4.7e-13 77.8 66 66.7
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 6.1e-13 77.4 82 54.9
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 8.0e-13 77.0 61 68.9
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.0e-12 76.6 66 62.1
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.0e-12 76.6 66 69.7
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.0e-12 76.6 63 69.8
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.4e-12 76.3 65 67.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.4e-12 76.3 63 68.3
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.8e-12 75.9 61 63.9
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.8e-12 75.9 65 67.7
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.3e-12 75.5 74 62.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.3e-12 75.5 64 67.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.3e-12 75.5 77 57.1
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 4.0e-12 74.7 66 62.1
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 4.0e-12 74.7 79 54.4
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 4.0e-12 74.7 77 59.7
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 5.2e-12 74.3 66 63.6
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 5.2e-12 74.3 74 55.4
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 5.2e-12 74.3 67 62.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 5.2e-12 74.3 74 62.2
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.2e-12 74.3 76 60.5
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 5.2e-12 74.3 64 67.2
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 6.8e-12 73.9 64 62.5
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.9e-12 73.6 66 62.1
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.9e-12 73.6 66 62.1
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 8.9e-12 73.6 66 62.1
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 8.9e-12 73.6 76 56.6
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.2e-11 73.2 76 59.2
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.2e-11 73.2 61 68.9
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.5e-11 72.8 82 52.4
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.5e-11 72.8 82 52.4
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.5e-11 72.8 79 54.4
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 2.0e-11 72.4 64 67.2
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.0e-11 72.4 63 66.7
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.6e-11 72.0 64 64.1
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 2.6e-11 72.0 67 59.7
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 3.4e-11 71.6 67 59.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.4e-11 71.6 75 61.3
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.4e-11 71.6 76 57.9
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.4e-11 71.6 63 68.3
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 4.4e-11 71.2 74 52.7
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 4.4e-11 71.2 65 61.5
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 4.4e-11 71.2 62 66.1
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 5.7e-11 70.9 63 65.1
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.7e-11 70.9 72 56.9
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.7e-11 70.9 72 56.9
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 5.7e-11 70.9 72 56.9
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.5e-11 70.5 62 64.5
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.2e-10 68.9 64 64.1
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 2.2e-10 68.9 64 62.5
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.8e-10 68.6 73 52.1
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.8e-10 68.6 60 63.3
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 4.9e-10 67.8 63 60.3
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 4.9e-10 67.8 61 63.9
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.9e-10 67.8 77 57.1
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.3e-10 67.4 65 60.0
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 6.3e-10 67.4 64 60.9
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 8.3e-10 67.0 84 51.2
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 8.3e-10 67.0 63 60.3
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.1e-09 66.6 61 60.7
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.4e-09 66.2 73 56.2
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.8e-09 65.9 68 60.3
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 3.1e-09 65.1 65 61.5
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 4.1e-09 64.7 63 57.1
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 4.1e-09 64.7 66 57.6
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 5.4e-09 64.3 65 56.9
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 7.0e-09 63.9 66 56.1
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 7.0e-09 63.9 71 50.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.2e-08 63.2 64 57.8
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.6e-08 62.8 64 54.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.0e-08 62.4 66 54.5
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 2.7e-08 62.0 70 55.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.5e-08 61.2 52 67.3
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 4.5e-08 61.2 64 56.2
SalBow4G0140 Salvia bowleyana HOM05D004722 ORTHO05D005453 4.5e-08 61.2 47 72.3
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 5.9e-08 60.8 63 52.4
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 5.9e-08 60.8 71 50.7
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 7.8e-08 60.5 52 67.3
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 7.8e-08 60.5 78 47.4
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 2.3e-07 58.9 62 51.6
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.9e-07 58.5 58 58.6
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 3.9e-07 58.2 73 49.3
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.9e-07 58.2 65 50.8
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 6.6e-07 57.4 61 50.8
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 6.6e-07 57.4 58 58.6
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 6.6e-07 57.4 58 58.6
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 8.6e-07 57.0 61 60.7
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 1.1e-06 56.6 61 52.5
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 1.5e-06 56.2 57 63.2
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.5e-06 56.2 75 53.3
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.9e-06 55.8 60 48.3
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.5e-06 55.5 66 53.0
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 3.3e-06 55.1 55 60.0
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 5.6e-06 54.3 41 68.3


User provided reference genes

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