Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.3e-135 486.5 262 100.0
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 3.2e-134 481.9 262 98.9
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.5e-133 478.4 262 98.1
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.7e-127 459.5 262 93.9
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.2e-127 459.1 262 93.5
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.2e-127 459.1 262 94.3
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 4.9e-127 458.0 262 93.5
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 6.4e-127 457.6 262 93.9
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 8.4e-127 457.2 262 93.5
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.4e-126 455.7 262 93.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.4e-126 454.5 262 92.7
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 87.0
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.1
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 85.5
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 85.1
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.4
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.4
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.4
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.7
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 86.6
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 85.1
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 84.7
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 84.0
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 85.1
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.7
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.4
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 82.8
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 83.6
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 83.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 84.4
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.1e-115 420.2 262 82.8
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 83.6
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.0
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 82.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 83.2
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 82.8
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 3.3e-115 418.7 262 82.8
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 84.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 7.4e-115 417.5 262 84.0
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 82.1
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 83.6
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 83.6
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 84.4
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 82.4
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.2
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.2
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 84.4
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 83.6
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 83.2
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 83.2
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 83.2
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 3.7e-114 415.2 263 83.7
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 4.8e-114 414.8 261 83.1
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 83.2
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 83.6
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 83.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 84.4
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-113 413.7 263 83.3
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 2.4e-113 412.5 262 82.1
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.4e-113 412.5 262 83.6
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 84.0
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 4.0e-113 411.8 262 84.4
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 9.0e-113 410.6 263 82.5
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.5e-112 409.8 264 84.8
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 82.8
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 2.6e-112 409.1 262 80.5
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.4e-112 408.7 262 81.7
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.5e-112 408.3 262 81.3
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 79.8
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 82.4
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.7e-111 406.4 262 82.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 80.5
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 82.1
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 4.9e-111 404.8 262 80.5
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 4.9e-111 404.8 262 80.5
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 6.4e-111 404.4 262 82.4
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 1.1e-110 403.7 259 82.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 1.1e-110 403.7 264 83.7
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.4e-110 403.3 262 79.0
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.9e-110 402.9 264 80.7
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.9
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 5.5e-110 401.4 263 80.2
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 7.1e-110 401.0 247 86.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 7.1e-110 401.0 247 86.6
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 80.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 1.3e-108 396.7 262 79.4
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 3.9e-108 395.2 263 80.6
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.1e-107 393.7 250 81.2
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.0
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 79.4
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 2.1e-106 389.4 262 79.4
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 78.2
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 79.0
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 77.9
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.1e-105 387.1 255 80.4
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.4e-105 386.0 263 79.8
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 4.0e-105 385.2 263 79.8
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 5.3e-105 384.8 246 83.3
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 78.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 78.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 78.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 78.2
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.2e-104 383.6 262 78.2
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 78.2
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 78.2
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 78.2
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.5e-104 383.3 262 78.6
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.6e-104 382.5 262 78.2
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 77.9
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 77.9
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 77.9
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 77.9
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.7e-103 379.8 262 77.1
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.7e-103 379.8 263 78.3
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.9e-103 379.0 262 77.5
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.9e-103 379.0 262 77.9
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 3.8e-103 378.6 262 77.5
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 77.6
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 77.6
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 77.6
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 5.5e-102 374.8 270 74.4
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 7.1e-102 374.4 270 74.4
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 1.2e-101 373.6 263 78.3
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 2.1e-101 372.9 263 78.3
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.9e-101 370.9 263 76.4
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 3.3e-99 365.5 248 77.8
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.7e-99 364.8 264 75.4
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.8e-98 362.5 262 75.2
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 4.1e-97 358.6 218 87.2
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.9e-97 357.8 249 74.7
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 6.5e-95 351.3 262 74.4
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.6e-93 345.1 263 70.3
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.8e-92 343.2 210 85.7
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 6.7e-92 341.3 241 76.8
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.7e-92 341.3 234 76.5
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.1e-91 340.5 228 77.2
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 3.3e-91 339.0 223 77.6
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.4e-89 333.6 214 82.7
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 4.1e-89 332.0 263 67.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 1.7e-87 326.6 215 79.1
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 6.5e-87 324.7 262 68.3
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 7.4e-83 311.2 253 71.5
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.5e-80 302.4 267 61.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.3e-79 300.4 218 71.1
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 7.2e-78 294.7 220 67.3
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 6.7e-76 288.1 250 66.4
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.0e-75 286.6 208 70.7
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 2.2e-74 283.1 247 64.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.6e-72 276.9 204 72.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.7e-69 266.2 262 62.2
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 7.5e-67 258.1 263 58.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.3e-66 257.3 211 65.4
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 2.2e-66 256.5 274 55.1
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.5e-59 233.8 235 60.9
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.0e-55 221.1 244 50.4
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 8.9e-52 208.0 130 80.0
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.8e-49 200.3 196 55.1
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.0e-48 196.8 120 84.2
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-46 190.3 138 74.6
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 3.6e-45 186.0 179 59.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 9.8e-43 177.9 118 79.7
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.2e-37 158.7 96 85.4
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 4.9e-34 149.1 191 48.2
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 9.2e-33 144.8 141 60.3
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 5.4e-25 119.0 69 88.4


User provided reference genes

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