Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.3e-257 892.5 452 100.0
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 3.4e-253 877.9 452 98.2
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.8e-233 812.4 452 90.5
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 2.8e-210 735.3 447 82.1
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.2e-181 640.2 452 76.5
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.8e-169 599.7 453 66.7
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 3.2e-166 589.0 447 65.8
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 1.6e-162 576.6 447 63.5
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.0e-136 490.0 451 54.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.3e-135 487.3 455 54.5
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.2e-135 486.5 445 55.3
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 3.8e-135 485.7 455 54.3
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.4e-134 483.8 455 53.4
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 7.2e-134 481.5 455 52.7
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.7e-133 479.6 450 54.4
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.7e-130 470.3 453 51.9
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 2.2e-130 469.9 445 53.5
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 2.2e-130 469.9 464 52.2
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.8e-130 469.5 445 52.4
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.8e-130 468.8 459 52.9
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.8e-129 466.8 450 53.6
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 4.1e-129 465.7 480 49.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.2e-128 464.2 454 52.4
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.2e-128 464.2 454 52.4
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.0e-128 463.4 455 52.1
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.4e-128 462.6 456 51.5
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 8.5e-127 458.0 414 54.8
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.4e-126 457.2 454 51.5
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.4e-126 457.2 464 51.3
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 3.2e-126 456.1 456 50.2
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 7.2e-126 454.9 447 50.6
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.2e-125 454.1 446 51.1
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.6e-125 453.8 446 50.7
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.1e-125 453.4 472 49.8
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.3e-124 449.9 457 49.9
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.3e-124 449.9 441 50.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.3e-124 449.9 462 50.9
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 3.0e-124 449.5 466 48.5
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 3.0e-124 449.5 451 51.7
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 3.9e-124 449.1 453 49.4
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.7e-124 448.4 455 50.3
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.8e-124 448.0 449 50.3
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.1e-123 447.6 449 50.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.5e-123 447.2 445 53.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.0e-123 446.8 454 50.7
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 2.6e-123 446.4 454 49.1
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 5.7e-123 445.3 442 50.9
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 7.4e-123 444.9 460 50.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 9.7e-123 444.5 457 49.9
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 9.7e-123 444.5 453 48.8
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.3e-122 444.1 449 49.4
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.7e-122 443.7 459 50.3
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.8e-122 442.2 450 49.6
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 8.2e-122 441.4 453 48.8
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-121 441.0 458 49.3
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.1e-121 441.0 443 50.3
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.4e-121 440.7 483 48.4
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.4e-121 440.7 461 49.7
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 2.4e-121 439.9 483 48.4
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.1e-121 439.5 448 48.9
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.1e-121 439.5 459 49.5
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 3.1e-121 439.5 461 49.9
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.1e-121 439.5 453 48.6
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.1e-121 439.5 458 48.5
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 4.1e-121 439.1 459 49.5
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 7.0e-121 438.3 458 49.3
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 9.1e-121 438.0 456 48.0
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.2e-120 437.6 430 50.5
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 2.0e-120 436.8 456 49.8
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.0e-120 436.8 455 48.1
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.0e-120 436.8 452 47.8
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.4e-120 436.0 457 48.1
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 5.9e-120 435.3 454 49.3
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 7.7e-120 434.9 460 49.1
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 7.7e-120 434.9 453 47.9
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.0e-119 434.5 457 47.9
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.0e-119 434.5 446 49.6
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.7e-119 433.7 456 48.2
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.7e-119 433.7 448 49.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.9e-119 433.0 449 50.1
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 3.8e-119 432.6 458 47.6
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 3.8e-119 432.6 458 47.6
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 3.8e-119 432.6 457 47.9
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 3.8e-119 432.6 452 48.5
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.8e-119 432.6 459 49.7
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 6.5e-119 431.8 457 47.9
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 6.5e-119 431.8 457 47.9
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 6.5e-119 431.8 448 48.4
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 8.5e-119 431.4 457 47.5
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-118 431.0 457 47.7
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.4e-118 430.6 457 47.7
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.9e-118 430.3 455 47.7
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 3.2e-118 429.5 435 48.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.2e-118 429.1 477 47.0
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 4.2e-118 429.1 446 48.4
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 4.2e-118 429.1 450 48.2
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 5.5e-118 428.7 455 48.1
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 5.5e-118 428.7 455 49.0
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.2e-117 427.6 419 51.3
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.7e-117 425.6 452 49.1
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 8.0e-117 424.9 458 48.9
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.8e-116 423.7 456 47.8
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.0e-116 422.9 445 49.4
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 6.7e-116 421.8 480 47.3
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 6.7e-116 421.8 442 47.7
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.8e-116 421.4 544 43.4
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.5e-115 420.6 488 46.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.6e-115 419.9 452 49.6
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 5.7e-115 418.7 484 44.8
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.3e-114 417.5 438 50.0
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.3e-114 417.5 445 49.2
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 8.2e-114 414.8 389 53.5
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.8e-113 413.7 400 52.0
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.8e-113 413.7 398 51.3
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.1e-113 412.9 435 48.3
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.9e-112 408.7 453 46.1
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.7e-111 407.1 470 47.4
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 2.9e-111 406.4 478 45.2
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.2e-109 401.0 414 49.5
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.0e-108 396.0 390 54.6
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 2.0e-107 393.7 406 48.8
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.2e-102 375.9 438 47.0
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.5e-99 367.5 391 48.3
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 3.1e-97 359.8 450 42.2
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 5.4e-97 359.0 426 43.9
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 7.7e-96 355.1 432 43.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.5e-94 350.9 384 47.1
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.4e-89 333.6 349 49.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.3e-79 301.2 319 49.5
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 8.9e-76 288.5 452 38.3
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.4e-75 286.2 438 39.0
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 9.8e-75 285.0 287 48.8
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 6.4e-66 255.8 254 48.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.5e-62 244.6 291 45.0
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.9e-58 230.3 271 44.6
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 6.4e-50 202.6 187 51.9
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 4.2e-49 199.9 312 39.4
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 9.0e-44 182.2 195 50.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.3e-42 178.3 191 49.7
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.4e-41 174.1 158 54.4
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 6.7e-39 166.0 178 46.1
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.7e-34 151.4 133 51.9
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.0e-31 140.6 143 50.3
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.9e-26 123.2 135 49.6
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 6.7e-23 112.8 121 47.1
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 8.7e-23 112.5 111 54.1
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.3e-22 110.2 118 49.2
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 5.7e-22 109.8 133 44.4
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 4.5e-19 100.1 355 33.0
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.7e-19 99.4 99 47.5
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.0e-18 96.7 100 47.0
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.0e-15 87.4 72 54.2
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 7.4e-14 82.8 74 48.6
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.1e-09 68.9 56 58.9
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 7.9e-08 62.8 60 45.0
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 8.8e-07 59.3 63 50.8


User provided reference genes

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