Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.0e-257 892.9 456 100.0
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 4.8e-255 884.0 456 98.9
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 3.7e-247 857.8 456 94.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.5e-244 846.7 456 95.4
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 3.2e-222 775.0 451 86.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 9.9e-200 700.3 452 77.9
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 3.2e-198 695.3 456 76.3
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 4.2e-198 694.9 456 76.1
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.1e-193 680.2 448 76.3
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.9e-191 672.2 456 75.0
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 6.4e-191 671.0 456 74.1
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.1e-190 670.2 473 71.0
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.4e-190 669.8 450 74.7
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 2.7e-189 665.6 470 71.5
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.9e-188 661.8 456 73.9
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 9.6e-187 657.1 457 75.5
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.4e-185 653.3 454 72.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 6.9e-185 651.0 460 72.2
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 6.9e-185 651.0 460 72.2
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.2e-184 650.2 473 70.6
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.3e-183 646.7 457 71.6
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.7e-183 646.4 454 69.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.9e-183 645.6 450 72.9
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.4e-182 643.3 448 71.9
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.4e-182 643.3 453 70.0
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 5.5e-182 641.3 454 70.7
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 7.1e-182 641.0 453 70.0
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 9.3e-182 640.6 456 69.7
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 9.3e-182 640.6 460 69.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.2e-181 640.2 460 69.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.6e-181 639.8 389 83.3
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.7e-181 639.0 454 68.3
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 3.5e-181 638.6 453 70.0
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 4.6e-181 638.3 454 69.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.0e-180 637.1 453 69.8
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 5.1e-180 634.8 453 68.7
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 6.7e-180 634.4 450 69.6
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 6.7e-180 634.4 440 70.9
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 6.7e-180 634.4 458 71.4
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.5e-179 633.3 458 69.4
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 2.5e-179 632.5 463 67.8
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 5.6e-179 631.3 458 69.7
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.3e-178 630.2 457 68.3
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.3e-178 630.2 453 69.8
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.6e-178 629.8 453 69.8
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.1e-178 629.4 449 70.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 4.8e-178 628.2 423 75.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 6.2e-178 627.9 449 68.4
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 9.0e-177 624.0 469 68.7
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.2e-176 623.6 416 76.2
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 2.0e-176 622.9 456 69.1
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.9e-175 619.0 449 66.4
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.8e-175 618.6 453 65.8
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 4.9e-175 618.2 449 67.9
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 6.5e-175 617.8 458 66.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 8.4e-175 617.5 454 65.4
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 4.2e-174 615.1 454 64.8
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 5.5e-174 614.8 436 70.9
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 7.1e-174 614.4 450 66.2
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 9.3e-174 614.0 451 68.1
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.6e-173 613.2 449 65.5
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.7e-173 612.5 450 65.8
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 2.7e-173 612.5 450 66.0
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 4.6e-173 611.7 451 69.2
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 4.6e-173 611.7 441 68.3
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 7.9e-173 610.9 450 65.6
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 7.9e-173 610.9 450 65.6
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 7.9e-173 610.9 458 65.7
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 7.9e-173 610.9 439 69.7
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.0e-172 610.5 450 66.2
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.3e-172 610.1 451 67.4
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.9e-172 608.6 444 68.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 8.7e-172 607.4 457 68.3
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-171 606.7 450 65.6
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.9e-171 606.3 466 66.1
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 3.3e-171 605.5 449 66.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 5.7e-171 604.7 466 65.9
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 5.7e-171 604.7 458 65.3
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-170 603.6 449 66.1
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.6e-170 603.2 459 65.1
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 2.8e-170 602.4 456 65.1
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.8e-170 602.4 450 64.4
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.7e-170 602.1 459 65.6
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 3.7e-170 602.1 439 67.9
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.7e-170 602.1 458 64.8
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 4.8e-170 601.7 459 64.9
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.8e-170 601.7 459 64.9
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-169 600.5 449 65.3
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.1e-169 600.5 449 65.3
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 2.4e-169 599.4 461 65.1
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 4.1e-169 598.6 456 66.4
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 5.3e-169 598.2 459 65.1
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 6.9e-169 597.8 499 63.1
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.0e-168 596.3 447 66.9
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 7.6e-168 594.3 441 66.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.3e-167 593.6 553 57.7
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.3e-167 593.6 449 66.1
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.2e-167 592.8 471 62.4
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.8e-167 592.0 476 62.2
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 3.2e-166 589.0 458 64.2
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 2.1e-165 586.3 393 73.8
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 6.1e-165 584.7 391 72.6
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.0e-164 583.9 431 68.7
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.3e-164 583.6 451 63.0
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.9e-164 582.0 456 64.9
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.5e-163 580.1 470 63.0
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.7e-162 575.5 453 64.2
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 5.0e-159 565.1 390 70.0
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.1e-158 563.9 472 62.1
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.2e-158 562.4 478 61.7
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.6e-157 558.9 456 61.4
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.9e-156 555.4 457 61.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.3e-155 552.4 403 70.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 5.3e-153 545.0 450 60.9
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.5e-152 543.5 454 61.2
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 3.6e-149 532.3 450 58.9
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 3.7e-138 495.7 432 59.0
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.7e-135 486.9 455 53.4
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 2.2e-135 486.5 452 54.4
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.0e-135 485.3 354 68.6
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.6e-133 480.3 447 55.7
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 6.1e-133 478.4 455 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 6.8e-132 474.9 443 54.2
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-131 473.8 451 53.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 7.2e-126 454.9 393 58.0
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.0e-120 436.8 444 55.9
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.5e-120 435.6 279 75.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 2.9e-119 433.0 452 53.8
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.0e-116 424.5 456 50.2
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.8e-108 397.1 398 53.5
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.3e-108 396.7 316 65.5
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.4e-100 370.9 252 71.4
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.5e-96 356.3 267 68.2
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.4e-92 344.4 456 43.4
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.4e-91 339.3 291 58.1
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 5.3e-76 289.3 198 71.2
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 3.2e-73 280.0 311 51.8
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.6e-69 267.7 457 38.7
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 7.4e-62 242.3 158 77.8
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.2e-58 230.7 142 76.8
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.6e-53 214.5 158 67.7
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 8.2e-53 212.2 178 56.2
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.3e-47 194.1 193 51.8
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.2e-41 173.7 135 65.2
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.6e-40 171.4 180 53.9
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.4e-39 168.3 94 91.5
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.2e-37 161.0 121 68.6
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.6e-32 144.8 118 63.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 3.3e-30 137.1 111 64.0
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.6e-27 127.5 77 76.6
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.2e-25 119.4 99 56.6
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 5.2e-23 113.2 63 90.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.5e-19 100.5 72 61.1
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 5.7e-14 83.2 58 72.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 2.8e-13 80.9 43 81.4
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 9.1e-12 75.9 42 81.0
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 7.2e-09 66.2 77 46.8


User provided reference genes

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