Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 2.0e-234 815.5 436 100.0
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 1.9e-216 755.7 426 96.0
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 2.8e-175 619.0 347 92.5
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 3.4e-157 558.9 448 73.9
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 9.6e-136 487.6 456 64.9
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 2.5e-120 436.4 400 63.5
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.4e-88 329.7 257 71.6
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 5.4e-78 295.8 481 42.0
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 9.5e-75 285.0 433 43.2
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.2e-72 278.1 197 75.1
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.0e-69 267.3 302 51.7
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.6e-66 256.5 297 51.2
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.6e-66 256.5 297 51.2
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 5.2e-65 252.7 452 42.5
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 2.6e-64 250.4 288 50.3
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 5.8e-64 249.2 438 41.3
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 9.8e-64 248.4 289 50.9
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 8.3e-63 245.4 450 40.7
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 5.4e-62 242.7 374 43.0
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 9.2e-62 241.9 429 39.2
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 1.2e-61 241.5 280 51.1
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 2.7e-61 240.4 460 39.3
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 3.5e-61 240.0 266 53.8
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 4.6e-61 239.6 461 39.5
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 1.0e-60 238.4 437 39.1
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.7e-60 237.7 448 40.2
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 3.9e-60 236.5 297 46.8
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 5.1e-60 236.1 430 39.5
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 5.1e-60 236.1 450 37.3
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 6.6e-60 235.7 291 49.5
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 8.6e-60 235.3 308 46.8
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.1e-59 235.0 421 39.9
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.3e-59 233.4 434 38.9
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 7.3e-59 232.3 317 47.9
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 9.5e-59 231.9 280 51.4
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.6e-58 231.1 414 40.3
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 8.1e-58 228.8 280 49.6
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.4e-57 228.0 313 45.7
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 3.1e-57 226.9 433 40.0
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 3.1e-57 226.9 286 49.0
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 8.9e-57 225.3 293 45.7
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 1.2e-56 224.9 311 47.6
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.2e-56 224.9 463 36.7
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.2e-56 224.9 453 37.5
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.5e-56 224.6 436 38.8
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 4.4e-56 223.0 275 46.2
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 4.4e-56 223.0 363 43.5
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 9.9e-56 221.9 443 37.9
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 1.7e-55 221.1 427 39.6
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 2.2e-55 220.7 454 37.4
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.2e-55 220.7 303 42.2
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 2.2e-55 220.7 307 43.6
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 3.7e-55 219.9 431 37.6
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 4.9e-55 219.5 459 36.4
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.1e-54 218.4 447 37.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.1e-54 218.4 280 49.6
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 2.4e-54 217.2 446 39.0
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 3.2e-54 216.9 446 38.6
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 7.1e-54 215.7 318 44.0
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 7.1e-54 215.7 373 40.2
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.2e-53 214.9 461 36.2
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.6e-53 214.5 465 37.6
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.1e-53 214.2 427 38.6
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 6.0e-53 212.6 390 38.5
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 6.0e-53 212.6 421 39.7
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 7.8e-53 212.2 339 44.2
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.7e-52 211.1 316 43.0
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.3e-52 210.7 387 38.0
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 3.0e-52 210.3 387 37.7
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 8.6e-52 208.8 387 39.8
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 3.3e-51 206.8 399 40.6
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 4.3e-51 206.5 278 44.2
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 5.6e-51 206.1 445 35.1
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 9.6e-51 205.3 291 42.3
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 9.6e-51 205.3 450 35.8
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 2.8e-50 203.8 259 47.1
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 8.1e-50 202.2 325 43.4
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 8.1e-50 202.2 272 44.9
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 1.1e-49 201.8 442 37.1
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 1.1e-49 201.8 442 37.1
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.1e-49 201.8 445 36.2
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 1.1e-49 201.8 277 46.6
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 1.4e-49 201.4 272 44.5
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 2.4e-49 200.7 443 38.4
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 3.1e-49 200.3 287 46.0
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 8.9e-49 198.7 379 38.5
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 2.6e-48 197.2 254 44.9
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 4.4e-48 196.4 314 43.0
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 4.4e-48 196.4 333 40.2
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 4.9e-47 193.0 367 38.1
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 4.9e-47 193.0 400 36.8
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.1e-46 191.8 312 40.1
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 4.2e-46 189.9 459 34.4
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 4.2e-46 189.9 433 36.5
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 2.7e-45 187.2 460 35.4
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 3.9e-44 183.3 430 35.1
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 2.5e-43 180.6 405 34.1
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 3.6e-42 176.8 294 38.8
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 1.4e-41 174.9 275 44.7
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 4.0e-41 173.3 440 35.9
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 1.2e-40 171.8 289 41.9
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 2.0e-40 171.0 268 41.0
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 4.4e-40 169.9 469 33.5
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 4.9e-39 166.4 281 41.3
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 6.4e-39 166.0 281 40.9
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 6.4e-39 166.0 281 40.9
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 6.4e-39 166.0 432 32.6
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 3.9e-36 156.8 431 33.4
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 3.9e-36 156.8 431 33.4
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 1.9e-35 154.5 288 42.0
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 5.6e-35 152.9 220 38.6
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 9.6e-35 152.1 263 38.4
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 1.4e-33 148.3 282 39.0
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 2.9e-31 140.6 274 34.7
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 3.8e-31 140.2 238 38.2
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 2.3e-28 131.0 260 38.1
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.5e-27 127.5 126 53.2
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 7.6e-24 115.9 249 36.1
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.3e-23 115.2 254 31.9
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 3.8e-23 113.6 228 38.6
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 6.0e-21 106.3 232 34.9
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 3.9e-20 103.6 247 35.6
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.9e-19 101.3 232 33.6
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 2.9e-15 87.4 252 30.2
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 3.8e-15 87.0 256 27.7
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 3.3e-11 73.9 377 24.4
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 2.2e-10 71.2 168 34.5
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 7.7e-08 62.8 47 59.6
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.3e-07 62.0 149 34.9
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 4.2e-06 57.0 49 59.2


User provided reference genes

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