Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 6.4e-255 883.6 459 100.0
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 2.6e-224 781.9 454 92.5
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 3.6e-189 665.2 437 83.3
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.7e-175 619.8 430 78.6
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.2e-168 597.0 446 74.7
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 5.0e-151 538.5 430 71.4
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 1.4e-124 450.7 514 52.9
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 3.7e-122 442.6 470 54.0
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 6.4e-122 441.8 384 60.7
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 1.9e-121 440.3 524 51.7
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 4.1e-121 439.1 459 55.1
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.5e-120 436.0 448 55.1
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 3.5e-120 436.0 445 56.4
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.9e-118 430.3 419 56.6
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.5e-118 429.9 489 53.2
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 2.1e-117 426.8 393 58.8
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 2.8e-117 426.4 437 55.8
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.1e-116 424.5 435 55.9
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 1.4e-116 424.1 457 53.4
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 2.3e-116 423.3 438 55.7
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 3.1e-116 422.9 405 55.8
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 4.0e-116 422.5 465 54.4
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 3.4e-115 419.5 430 56.3
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 4.4e-115 419.1 453 53.6
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 9.9e-115 417.9 393 58.3
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 1.7e-114 417.2 419 56.8
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 2.2e-114 416.8 400 57.5
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 6.4e-114 415.2 463 52.7
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 6.4e-114 415.2 457 53.6
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 8.4e-114 414.8 440 54.3
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.1e-113 414.5 378 58.2
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 4.6e-112 409.1 397 55.9
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 4.6e-112 409.1 394 56.3
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 7.8e-112 408.3 537 49.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.0e-111 407.9 434 56.0
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 1.0e-111 407.9 416 55.0
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.0e-111 407.9 403 56.6
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 1.0e-111 407.9 413 55.0
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.3e-111 407.5 440 54.3
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 3.0e-111 406.4 427 52.7
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 3.9e-111 406.0 428 54.2
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 5.6e-110 402.1 441 52.8
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 7.3e-110 401.7 470 51.3
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 8.1e-109 398.3 383 56.7
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 8.1e-109 398.3 457 51.9
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.4e-108 396.7 435 51.7
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 2.4e-108 396.7 413 51.8
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 3.1e-108 396.4 447 53.0
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 3.4e-107 392.9 435 53.6
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 5.8e-107 392.1 308 63.6
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.8e-107 392.1 317 65.3
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.6e-107 391.7 317 64.0
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 9.9e-107 391.3 336 61.9
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.7e-106 390.6 452 48.2
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 1.7e-106 390.6 409 55.3
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 2.2e-106 390.2 331 60.7
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 2.2e-106 390.2 321 64.2
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 2.9e-106 389.8 416 55.3
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 3.8e-106 389.4 482 48.1
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 4.9e-106 389.0 336 61.0
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 4.9e-106 389.0 452 49.3
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 4.9e-106 389.0 334 60.2
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 8.4e-106 388.3 395 56.2
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 8.4e-106 388.3 304 63.8
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 1.9e-105 387.1 412 54.4
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 7.1e-105 385.2 449 52.6
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 1.2e-104 384.4 409 50.6
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 3.5e-104 382.9 435 48.5
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 7.8e-104 381.7 421 49.2
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 1.3e-103 380.9 315 62.9
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.3e-103 380.9 432 52.1
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.7e-103 380.6 470 48.1
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 5.1e-103 379.0 412 52.4
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.9e-102 377.1 461 48.8
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 9.6e-102 374.8 435 48.5
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 4.8e-101 372.5 453 46.8
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 1.1e-100 371.3 483 46.6
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 1.5e-99 367.5 430 50.2
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 3.4e-99 366.3 467 49.5
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 8.4e-98 361.7 382 54.7
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.1e-97 361.3 324 57.7
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 3.2e-97 359.8 368 53.3
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 5.4e-97 359.0 431 50.1
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 6.7e-95 352.1 447 50.6
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 1.1e-94 351.3 441 48.1
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 7.4e-94 348.6 300 59.3
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 1.4e-92 344.4 303 61.7
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 4.0e-92 342.8 394 51.0
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 9.0e-92 341.7 388 50.0
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 3.0e-87 326.6 483 44.5
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 3.3e-86 323.2 259 62.9
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 5.8e-83 312.4 404 44.1
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 5.8e-83 312.4 419 44.9
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.3e-79 300.4 447 44.1
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 5.7e-78 295.8 338 52.7
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 1.9e-65 254.2 417 40.5
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 7.2e-65 252.3 399 42.4
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 3.9e-63 246.5 333 43.8
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 3.7e-61 240.0 286 45.5
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 4.1e-60 236.5 400 38.2
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.2e-59 235.0 295 47.5
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 2.6e-59 233.8 405 38.3
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 7.2e-57 225.7 302 42.4
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 8.8e-55 218.8 202 57.9
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 5.3e-52 209.5 290 44.1
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 5.0e-50 203.0 170 60.0
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.6e-48 198.0 102 95.1
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 4.8e-45 186.4 169 57.4
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 2.7e-43 180.6 202 50.0
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 4.0e-39 166.8 219 42.5
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 2.6e-38 164.1 123 68.3
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 5.9e-35 152.9 227 37.9
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 1.0e-34 152.1 153 52.9
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.5e-33 147.5 188 46.8
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 3.6e-32 143.7 124 62.1
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.0e-30 137.9 125 58.4
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 2.6e-30 137.5 109 64.2
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 8.6e-26 122.5 71 91.5
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.5e-25 121.7 223 35.4
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.7e-24 116.7 126 52.4
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.7e-24 116.7 126 52.4
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 5.2e-23 113.2 88 63.6
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.1e-20 105.5 62 75.8
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 5.2e-15 86.7 67 58.2
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 8.9e-15 85.9 52 73.1
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 1.4e-12 78.6 96 39.6
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 1.7e-10 71.6 46 67.4
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 6.6e-10 69.7 46 65.2
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.1e-09 68.9 149 32.9
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 5.2e-07 60.1 44 72.7
COL.COLO4_26597 Corchorus olitorius HOM05D000001 ORTHO05D010004 8.9e-07 59.3 71 49.3


User provided reference genes

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