Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 9.7e-127 456.8 232 100.0
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 8.5e-115 417.2 218 97.2
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 4.7e-97 358.2 218 82.1
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 6.3e-94 347.8 225 77.8
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 5.6e-90 334.7 225 75.1
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 2.7e-84 315.8 218 76.1
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 3.4e-79 298.9 179 84.9
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 8.9e-72 274.2 183 77.0
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.6e-55 219.5 220 55.0
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.0e-51 207.6 218 52.8
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 3.9e-51 205.7 215 52.6
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.9e-50 203.4 218 52.3
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.3e-50 201.4 213 53.1
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.4e-48 197.2 188 55.9
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 4.0e-48 195.7 216 49.5
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.0e-47 193.4 216 44.4
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 2.9e-46 189.5 216 47.7
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.4e-45 186.4 220 50.0
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 4.2e-45 185.7 220 48.6
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 2.1e-44 183.3 221 48.0
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 2.1e-44 183.3 220 47.3
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 3.5e-44 182.6 228 46.5
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 7.9e-44 181.4 212 48.1
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 1.0e-43 181.0 217 47.9
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 3.0e-43 179.5 210 45.2
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 5.1e-43 178.7 209 45.9
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 6.7e-43 178.3 207 45.9
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 8.7e-43 177.9 208 46.2
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.1e-42 177.6 207 47.3
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.5e-42 177.2 219 47.0
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.5e-42 176.4 216 45.8
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 9.6e-42 174.5 219 48.4
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.3e-41 174.1 220 45.5
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.6e-41 173.7 215 43.3
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.8e-41 172.9 218 47.7
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 2.8e-41 172.9 205 47.3
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 3.7e-41 172.6 220 45.9
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 3.7e-41 172.6 208 48.1
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 6.2e-41 171.8 207 45.9
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 6.2e-41 171.8 219 45.7
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.1e-40 171.0 219 44.7
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 2.4e-40 169.9 219 44.3
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 3.1e-40 169.5 208 45.2
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 6.9e-40 168.3 219 46.6
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.2e-39 167.5 179 50.3
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.2e-39 167.5 209 46.9
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 4.5e-39 165.6 218 42.7
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 5.8e-39 165.2 211 45.0
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 7.6e-39 164.9 215 43.7
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 9.9e-39 164.5 209 45.0
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 2.9e-38 162.9 215 42.8
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 3.8e-38 162.5 209 42.1
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 3.8e-38 162.5 176 50.0
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 4.9e-38 162.2 210 44.8
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 6.4e-38 161.8 224 44.2
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 6.4e-38 161.8 207 44.9
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.4e-37 160.6 167 47.3
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.4e-37 160.6 223 43.0
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.9e-37 160.2 215 44.7
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 2.4e-37 159.8 210 42.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 5.5e-37 158.7 214 43.9
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 1.6e-36 157.1 216 43.1
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.6e-36 157.1 173 50.9
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.6e-36 157.1 173 50.9
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 2.1e-36 156.8 229 43.7
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 2.1e-36 156.8 212 44.3
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 4.6e-36 155.6 223 44.8
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 1.0e-35 154.5 219 42.9
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 1.0e-35 154.5 215 40.5
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.0e-35 154.5 224 42.4
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.3e-35 154.1 209 45.5
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.3e-35 154.1 215 40.9
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.8e-35 153.7 215 43.3
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.8e-35 153.7 215 42.3
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 3.9e-35 152.5 215 41.9
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 3.3e-34 149.4 211 43.1
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 3.3e-34 149.4 222 41.4
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 7.4e-34 148.3 217 42.9
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.6e-33 147.1 212 43.4
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 3.7e-33 146.0 215 41.4
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.1e-32 144.4 164 47.0
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.8e-32 143.7 206 40.8
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 3.1e-32 142.9 218 41.3
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 5.3e-32 142.1 215 40.5
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 2.6e-31 139.8 171 45.6
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 7.6e-31 138.3 215 41.9
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.4e-29 134.0 140 49.3
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 5.5e-29 132.1 201 40.3
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 9.3e-29 131.3 159 45.3
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.1e-28 130.2 156 46.2
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.7e-28 129.8 128 53.9
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 3.5e-28 129.4 175 41.1
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 6.0e-28 128.6 128 53.9
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 7.9e-28 128.3 216 36.6
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.0e-27 127.9 167 40.1
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 3.0e-27 126.3 214 36.4
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 3.9e-27 125.9 139 48.9
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 5.1e-27 125.6 213 37.6
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 6.7e-27 125.2 304 31.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 8.7e-27 124.8 166 42.8
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 1.9e-26 123.6 166 39.8
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 2.5e-26 123.2 214 35.0
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.5e-26 123.2 150 46.7
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 5.7e-26 122.1 201 38.8
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 5.7e-26 122.1 208 36.5
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 1.6e-25 120.6 134 50.7
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.6e-25 120.6 159 41.5
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.2e-25 120.2 172 44.2
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 4.8e-25 119.0 222 34.7
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 1.1e-24 117.9 189 40.7
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 3.1e-24 116.3 175 41.1
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 4.1e-24 115.9 190 37.4
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 4.1e-24 115.9 216 37.5
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 5.3e-24 115.5 127 48.0
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 6.9e-24 115.2 210 35.7
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.5e-23 114.0 145 41.4
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 2.0e-23 113.6 173 39.9
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.6e-23 113.2 148 42.6
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 5.9e-23 112.1 188 39.9
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.9e-23 112.1 164 40.9
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.2e-22 110.2 164 40.2
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.9e-22 109.8 177 39.5
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.8e-22 109.4 130 47.7
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.8e-22 109.4 202 36.6
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.8e-22 109.4 174 40.2
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 6.5e-22 108.6 129 46.5
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 8.5e-22 108.2 157 36.9
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.4e-21 107.5 164 37.2
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.5e-21 106.7 216 35.2
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.5e-21 106.7 124 49.2
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 5.5e-21 105.5 145 40.0
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 9.4e-21 104.8 154 39.0
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 1.2e-20 104.4 139 36.7
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.1e-20 103.6 70 64.3
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 6.1e-20 102.1 171 38.6
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 6.1e-20 102.1 114 46.5
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 1.0e-19 101.3 86 51.2
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 3.0e-19 99.8 128 43.0
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.0e-19 99.8 115 45.2
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 8.8e-19 98.2 116 48.3
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 1.7e-17 94.0 83 56.6
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.8e-17 93.2 131 43.5
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.1e-16 91.3 137 40.1
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 4.1e-16 89.4 212 34.4
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.7e-14 84.0 86 50.0
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 2.9e-14 83.2 150 32.0
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 5.0e-14 82.4 142 32.4
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 6.5e-14 82.0 162 30.9
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 4.7e-12 75.9 56 58.9
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 3.0e-11 73.2 74 44.6
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 4.4e-10 69.3 98 34.7
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.3e-09 67.8 173 31.8
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 4.8e-09 65.9 120 36.7
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 1.4e-08 64.3 121 32.2
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.8e-08 63.9 128 39.8
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 5.3e-08 62.4 159 32.7
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.6e-07 60.1 39 64.1
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 3.4e-07 59.7 89 41.6
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.5e-07 59.3 89 41.6
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 2.9e-06 56.6 92 39.1
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 6.5e-06 55.5 92 37.0


User provided reference genes

Program Settings