Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 3.2e-54 214.9 114 100.0
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 7.0e-54 213.8 114 99.1
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 2.0e-53 212.2 114 98.2
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 4.0e-49 198.0 114 90.4
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 2.6e-48 195.3 114 91.2
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 7.5e-48 193.7 114 90.4
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 3.2e-46 188.3 114 83.3
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 4.6e-45 184.5 110 85.5
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 6.0e-45 184.1 114 83.3
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 6.0e-45 184.1 114 83.3
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 82.5
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 85.1
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.3e-44 183.0 115 83.5
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.7e-44 182.6 145 71.7
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 83.3
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 81.6
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 80.7
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 80.7
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 79.8
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 1.1e-43 179.9 115 80.9
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.5e-43 179.5 112 80.4
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 78.9
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 2.5e-43 178.7 112 79.5
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 79.8
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.5e-43 178.7 112 80.4
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 78.9
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 3.3e-43 178.3 110 82.7
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 4.3e-43 177.9 112 78.6
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 79.8
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 80.7
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 80.7
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 79.8
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 7.3e-43 177.2 112 79.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 78.1
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.2e-42 176.4 112 78.6
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 81.6
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 79.1
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 79.1
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 79.1
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 79.1
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.2e-42 176.4 114 79.8
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 78.1
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 78.9
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 81.6
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 2.8e-42 175.3 112 79.5
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 2.8e-42 175.3 112 77.7
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 79.8
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 77.2
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 77.2
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 78.1
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-41 173.3 115 78.3
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 78.9
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.4e-41 172.9 112 76.8
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 80.7
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.8e-41 172.6 112 79.5
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.8e-41 172.6 115 78.3
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.8e-41 172.6 112 76.8
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.3e-41 172.2 115 79.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.3e-41 172.2 115 78.3
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 76.3
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 77.2
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 76.3
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 76.3
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 78.3
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 77.2
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 5.2e-41 171.0 115 75.7
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 75.9
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 76.3
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 78.1
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 76.3
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.2e-40 169.9 114 82.5
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.2e-40 169.9 115 77.4
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 75.0
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 79.5
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 74.6
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.5e-40 169.5 112 76.8
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 2.0e-40 169.1 112 75.0
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 75.4
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 75.4
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 73.7
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 75.0
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 75.0
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 76.3
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 76.3
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 78.9
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 76.3
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 2.2e-39 165.6 113 76.1
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 2.2e-39 165.6 109 76.1
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 8.3e-39 163.7 104 80.8
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 8.3e-39 163.7 111 75.7
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 8.3e-39 163.7 112 76.8
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 113 71.7
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.4e-38 162.9 112 75.0
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 74.6
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 74.6
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 4.1e-38 161.4 114 74.6
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 4.1e-38 161.4 111 74.8
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 5.4e-38 161.0 106 76.4
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 7.1e-38 160.6 112 75.9
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 9.2e-38 160.2 114 73.7
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.2e-38 160.2 146 62.3
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 9.2e-38 160.2 113 70.8
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-37 159.1 114 73.7
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-37 159.1 114 73.7
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 2.7e-37 158.7 142 62.0
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 7.8e-37 157.1 114 71.9
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.7e-36 156.0 114 72.8
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 3.0e-36 155.2 112 72.3
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-35 153.3 114 71.1
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.5e-35 152.1 114 69.3
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 6.2e-34 147.5 111 71.2
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 8.1e-34 147.1 81 91.4
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.0e-33 144.8 94 77.7
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 4.0e-33 144.8 111 70.3
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.2e-32 143.3 81 90.1
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 3.4e-32 141.7 111 66.7
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 4.4e-32 141.4 84 88.1
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.9e-31 137.9 115 67.0
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 6.4e-31 137.5 83 85.5
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 6.4e-31 137.5 83 85.5
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.1e-30 136.7 77 90.9
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 2.4e-30 135.6 79 88.6
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 9.2e-30 133.7 100 71.0
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 8.6e-28 127.1 94 71.3
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.1e-26 122.5 72 86.1
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-25 119.4 65 90.8
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 6.9e-25 117.5 77 77.9
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.3e-23 113.2 78 73.1
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.9e-22 109.4 112 54.5
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 5.4e-22 107.8 106 54.7
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 5.4e-22 107.8 114 55.3
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.6e-21 106.3 104 57.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.0e-20 103.6 72 72.2
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 8.7e-20 100.5 77 67.5
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 7.3e-19 97.4 108 50.9
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 7.3e-19 97.4 77 66.2
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 9.6e-19 97.1 109 46.8
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.6e-18 96.3 100 56.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 1.1e-17 93.6 63 73.0
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 6.9e-17 90.9 65 69.2
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.2e-15 85.9 80 53.8
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 6.4e-15 84.3 95 52.6
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.1e-14 83.6 57 75.4
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.1e-14 83.6 104 46.2
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 3.2e-14 82.0 106 45.3
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.2e-14 81.6 45 91.1
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 4.2e-14 81.6 51 82.4
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.1e-13 79.3 50 80.0
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.0e-12 77.0 44 84.1
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-12 76.3 51 78.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 3.9e-12 75.1 44 81.8
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 3.9e-12 75.1 106 43.4
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 1.1e-11 73.6 44 79.5
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 1.5e-11 73.2 55 65.5
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.3e-11 72.0 95 50.5
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 3.3e-11 72.0 95 42.1
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.6e-11 70.5 62 56.5
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 3.6e-10 68.6 99 44.4
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 5.3e-09 64.7 97 43.3
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 2.0e-08 62.8 60 53.3
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.0e-08 62.8 59 49.2
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 9.9e-08 60.5 91 39.6


User provided reference genes

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