Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 4.8e-62 241.1 134 100.0
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 7.5e-55 217.2 142 89.4
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 8.3e-54 213.8 140 89.3
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.3e-43 179.9 144 77.8
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 5.2e-40 167.9 143 76.2
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 7.8e-36 154.1 148 65.5
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 2.1e-25 119.4 97 67.0
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 2.3e-24 115.9 94 66.0
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 8.9e-24 114.0 94 64.9
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 1.2e-23 113.6 107 58.9
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 1.2e-23 113.6 94 63.8
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 4.4e-23 111.7 95 62.1
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 4.4e-23 111.7 95 62.1
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 3.2e-21 105.5 89 62.9
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 4.1e-21 105.1 89 62.9
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 5.4e-21 104.8 139 51.8
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 7.1e-21 104.4 90 60.0
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 4.6e-20 101.7 94 59.6
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 6.0e-20 101.3 90 61.1
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 5.1e-19 98.2 98 54.1
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.1e-18 97.1 94 59.6
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 2.5e-18 95.9 92 58.7
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 4.3e-18 95.1 94 59.6
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 4.3e-18 95.1 91 58.2
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 5.6e-18 94.7 142 47.2
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 7.3e-18 94.4 90 57.8
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 7.3e-18 94.4 136 49.3
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 9.5e-18 94.0 112 48.2
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 1.2e-17 93.6 134 44.0
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 2.1e-17 92.8 88 58.0
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 2.1e-17 92.8 91 53.8
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 2.1e-17 92.8 92 55.4
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 2.8e-17 92.4 84 60.7
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.6e-17 92.0 127 46.5
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 4.7e-17 91.7 95 54.7
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 8.1e-17 90.9 92 55.4
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 8.1e-17 90.9 98 51.0
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 8.1e-17 90.9 130 43.8
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 1.1e-16 90.5 97 56.7
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 1.1e-16 90.5 90 56.7
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 1.4e-16 90.1 102 56.9
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 2.3e-16 89.4 90 54.4
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 2.3e-16 89.4 102 52.0
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 6.8e-16 87.8 90 50.0
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 8.9e-16 87.4 103 49.5
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 8.9e-16 87.4 97 57.7
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 2.0e-15 86.3 156 39.1
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 2.6e-15 85.9 89 53.9
PGSC0003DMG402006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 4.4e-15 85.1 46 97.8
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 5.8e-15 84.7 93 55.9
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 7.6e-15 84.3 92 50.0
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 7.6e-15 84.3 92 50.0
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 2.2e-14 82.8 94 54.3
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 2.2e-14 82.8 93 49.5
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 2.9e-14 82.4 103 45.6
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 3.7e-14 82.0 106 48.1
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 3.7e-14 82.0 138 44.2
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 6.4e-14 81.3 103 50.5
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 7.1e-13 77.8 98 45.9
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 7.1e-13 77.8 108 42.6
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 1.6e-12 76.6 105 42.9
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 1.6e-12 76.6 105 42.9
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 1.6e-12 76.6 94 47.9
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 2.7e-12 75.9 99 46.5
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 2.7e-12 75.9 99 46.5
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.6e-12 75.1 106 43.4
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 7.8e-12 74.3 129 41.9
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 7.8e-12 74.3 114 45.6
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 1.0e-11 73.9 106 43.4
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.0e-11 73.9 98 44.9
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.0e-11 73.9 98 44.9
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 1.3e-11 73.6 118 40.7
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 1.3e-11 73.6 118 40.7
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 1.7e-11 73.2 107 43.9
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 2.3e-11 72.8 98 43.9
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 3.9e-11 72.0 97 44.3
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 6.6e-11 71.2 95 43.2
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 8.6e-11 70.9 96 44.8
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 1.1e-10 70.5 90 48.9
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.1e-10 70.5 98 44.9
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 1.9e-10 69.7 116 39.7
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 1.9e-10 69.7 98 43.9
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 1.9e-10 69.7 98 43.9
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 1.9e-10 69.7 133 36.1
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 1.9e-10 69.7 140 39.3
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 1.9e-10 69.7 121 40.5
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 2.5e-10 69.3 121 40.5
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 3.3e-10 68.9 112 39.3
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 5.6e-10 68.2 98 40.8
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 5.6e-10 68.2 108 44.4
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 9.6e-10 67.4 107 43.9
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 2.1e-09 66.2 61 59.0
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 2.8e-09 65.9 75 52.0
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 8.1e-09 64.3 111 42.3
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.8e-08 63.2 53 60.4
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 3.1e-08 62.4 122 36.9
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 5.2e-08 61.6 95 43.2
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 5.2e-08 61.6 53 58.5
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 5.2e-08 61.6 115 40.9
Oeu003913.1 Olea europaea HOM05D007435 ORTHO05D009338 5.8e-07 58.2 67 49.3
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 9.9e-07 57.4 65 46.2
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 1.7e-06 56.6 107 42.1
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 4.9e-06 55.1 142 37.3


User provided reference genes

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