Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 4.5e-152 541.2 265 100.0
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 2.9e-119 432.2 261 80.5
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.8e-93 345.9 262 68.3
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.8e-93 345.9 230 74.8
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 6.4e-58 228.4 216 53.7
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 6.4e-58 228.4 216 53.7
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 1.4e-57 227.3 224 52.7
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.4e-57 227.3 215 55.3
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 1.2e-56 224.2 218 51.8
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 1.3e-55 220.7 203 54.2
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 3.9e-55 219.2 203 55.2
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 8.7e-55 218.0 217 50.2
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.5e-54 217.2 206 54.4
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.6e-53 213.8 204 53.9
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 1.6e-53 213.8 216 53.2
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 2.8e-53 213.0 235 51.1
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 8.1e-53 211.5 208 51.0
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 1.4e-52 210.7 210 51.4
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 1.8e-52 210.3 234 49.1
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 6.9e-52 208.4 235 44.3
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 1.5e-51 207.2 227 48.9
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 2.0e-51 206.8 205 50.7
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 1.3e-50 204.1 208 49.5
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 1.3e-50 204.1 209 48.8
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 1.7e-50 203.8 232 46.6
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 1.7e-50 203.8 232 46.1
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 2.2e-50 203.4 218 49.1
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 2.2e-50 203.4 202 51.5
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 2.9e-50 203.0 217 49.3
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 2.9e-50 203.0 203 47.8
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 4.9e-50 202.2 215 49.8
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 4.9e-50 202.2 218 50.5
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 6.4e-50 201.8 205 49.8
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 8.4e-50 201.4 237 47.7
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 8.4e-50 201.4 218 48.6
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 1.1e-49 201.1 216 50.5
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 1.4e-49 200.7 218 49.1
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 1.4e-49 200.7 202 52.0
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 1.9e-49 200.3 218 49.1
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 1.9e-49 200.3 218 49.1
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 2.4e-49 199.9 218 48.6
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 3.2e-49 199.5 217 48.4
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 4.2e-49 199.1 201 50.7
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 4.2e-49 199.1 214 50.9
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 5.4e-49 198.7 202 51.0
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 7.1e-49 198.4 224 46.4
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 9.3e-49 198.0 215 49.8
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 1.2e-48 197.6 232 44.8
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.7e-48 196.4 241 43.6
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 4.6e-48 195.7 227 46.3
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 4.6e-48 195.7 208 46.6
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 4.6e-48 195.7 241 43.6
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 4.6e-48 195.7 202 49.5
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 7.8e-48 194.9 218 42.7
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 1.0e-47 194.5 218 43.1
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 1.3e-47 194.1 216 47.2
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.3e-47 194.1 206 48.1
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 2.3e-47 193.4 214 45.8
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.0e-47 193.0 229 45.0
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 3.0e-47 193.0 219 43.8
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 5.1e-47 192.2 228 45.2
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 6.6e-47 191.8 237 43.5
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 6.6e-47 191.8 215 45.6
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 6.6e-47 191.8 220 48.2
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 8.7e-47 191.4 235 42.1
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 8.7e-47 191.4 209 46.4
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 8.7e-47 191.4 232 46.1
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 1.5e-46 190.7 244 43.9
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 1.9e-46 190.3 214 49.5
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 4.3e-46 189.1 254 42.1
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 5.6e-46 188.7 213 47.9
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 5.6e-46 188.7 214 47.7
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-45 187.2 203 46.3
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.1e-45 186.8 223 44.4
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 2.1e-45 186.8 209 49.8
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 3.6e-45 186.0 207 47.8
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 4.8e-45 185.7 223 45.3
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.5e-43 180.6 211 46.4
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 2.6e-43 179.9 217 47.5
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 2.6e-43 179.9 201 45.8
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 4.5e-43 179.1 201 47.3
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 5.8e-43 178.7 244 43.4
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 5.8e-43 178.7 226 46.0
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 1.3e-42 177.6 202 46.5
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 1.6e-40 170.6 242 42.6
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 2.1e-40 170.2 201 45.8
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.3e-39 167.5 212 46.2
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.6e-37 160.6 229 40.2
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 1.5e-35 154.1 207 44.0
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 4.5e-35 152.5 226 42.0
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 5.8e-35 152.1 181 47.5
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 1.7e-34 150.6 212 40.6
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.9e-34 149.8 244 40.6
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.9e-34 149.8 244 40.6
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 4.9e-34 149.1 229 41.9
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 6.5e-34 148.7 210 42.4
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 7.1e-33 145.2 206 38.8
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 7.4e-30 135.2 216 42.1
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 5.8e-27 125.6 170 46.5
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 1.4e-17 94.4 258 31.0
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.2e-16 91.3 174 37.4
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 1.2e-16 91.3 144 41.7
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 2.1e-16 90.5 224 30.8
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 7.9e-16 88.6 134 42.5
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.9e-09 67.4 153 30.1
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 7.2e-09 65.5 76 51.3
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-07 60.8 148 29.1


User provided reference genes

Program Settings