Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.2e-127 459.9 238 100.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.8e-121 438.7 238 95.4
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 9.0e-120 433.7 238 95.0
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 5.7e-106 387.9 238 84.9
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 9.7e-106 387.1 239 84.9
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 4.1e-104 381.7 237 84.4
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.3e-98 362.1 238 79.4
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.2e-95 353.6 230 83.5
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 8.5e-94 347.4 238 76.5
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.4e-75 287.0 238 65.5
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.8e-75 286.6 227 68.3
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 4.0e-75 285.4 158 84.2
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.4e-74 282.3 156 82.7
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 9.8e-74 280.8 220 66.4
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.7e-73 280.0 150 84.0
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.2e-73 279.6 230 63.9
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 6.3e-73 278.1 223 65.0
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 8.3e-73 277.7 221 66.1
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 8.3e-73 277.7 225 65.8
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.1e-72 277.3 150 84.0
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.1e-72 277.3 218 67.0
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 4.1e-72 275.4 223 65.9
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.4e-72 275.0 166 77.7
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 5.4e-72 275.0 226 63.3
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 9.1e-72 274.2 221 67.0
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.2e-71 273.9 155 78.7
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.2e-71 273.9 150 83.3
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 2.0e-71 273.1 230 61.3
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 5.9e-71 271.6 228 64.0
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.7e-70 270.0 218 61.5
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 1.7e-70 270.0 223 65.9
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.7e-70 270.0 234 63.2
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 3.8e-70 268.9 220 64.5
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.6e-70 268.1 144 84.0
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 6.6e-70 268.1 218 62.8
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 6.6e-70 268.1 171 75.4
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 8.6e-70 267.7 217 64.5
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.1e-69 267.3 153 78.4
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.5e-69 266.9 220 63.2
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 2.5e-69 266.2 230 63.9
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.3e-69 265.8 178 71.3
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 7.2e-69 264.6 224 63.4
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 7.2e-69 264.6 196 66.3
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 7.2e-69 264.6 230 59.1
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.2e-68 263.8 229 62.4
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 2.1e-68 263.1 140 87.1
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.1e-68 261.5 154 74.7
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 8.0e-68 261.2 156 78.2
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 8.0e-68 261.2 218 63.8
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.0e-67 260.8 172 72.7
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.4e-67 260.4 154 74.0
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.4e-67 260.4 165 74.5
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 1.4e-67 260.4 176 70.5
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.8e-67 260.0 234 59.8
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.0e-67 259.2 148 79.7
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.0e-67 258.8 154 73.4
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 6.8e-67 258.1 172 72.1
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.5e-66 256.9 175 72.0
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.0e-66 256.5 192 66.1
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.4e-66 255.8 172 71.5
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 3.4e-66 255.8 221 61.1
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 5.7e-66 255.0 230 61.7
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 7.5e-66 254.6 168 73.8
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.8e-66 254.2 209 60.8
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.3e-65 253.8 234 59.4
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.7e-65 253.4 143 81.1
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.2e-65 253.1 175 70.9
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.8e-65 252.7 237 56.1
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 6.3e-65 251.5 241 56.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.4e-64 249.6 228 60.5
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.2e-63 247.3 228 59.2
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 3.5e-63 245.7 194 62.4
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 5.0e-62 241.9 142 78.9
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.0e-62 241.9 210 59.5
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.1e-61 240.7 150 70.0
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.9e-61 240.0 137 81.0
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.5e-61 239.6 224 56.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 3.3e-61 239.2 203 61.1
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 4.3e-61 238.8 229 58.5
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 7.3e-61 238.0 201 63.2
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.2e-60 237.3 209 62.2
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 6.1e-60 235.0 221 57.0
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 1.0e-59 234.2 215 57.7
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.8e-59 233.4 201 63.2
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 4.0e-59 232.3 193 62.7
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 6.8e-59 231.5 220 57.3
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 3.4e-58 229.2 131 79.4
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.2e-57 226.5 208 61.5
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.9e-56 223.4 150 74.0
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.4e-56 223.0 158 65.2
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.4e-56 223.0 158 65.2
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 2.4e-56 223.0 243 53.1
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 5.4e-56 221.9 181 62.4
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.0e-55 219.9 218 53.2
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 2.0e-55 219.9 184 59.2
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.7e-55 219.5 227 52.4
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.0e-54 217.6 202 55.9
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.9e-54 215.7 150 62.7
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.9e-54 215.7 150 62.0
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 3.9e-54 215.7 232 55.2
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 6.6e-54 214.9 150 65.3
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 8.6e-54 214.5 113 82.3
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 8.6e-54 214.5 221 52.5
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-53 214.2 223 52.0
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.9e-53 213.4 109 87.2
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 4.3e-53 212.2 209 51.7
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.6e-52 210.3 220 51.4
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.6e-52 210.3 137 70.8
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 4.7e-52 208.8 220 47.7
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-51 207.2 152 63.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.3e-51 206.5 256 47.7
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 8.9e-51 204.5 166 54.8
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.4e-50 202.6 144 59.7
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 4.4e-50 202.2 148 58.8
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 5.8e-50 201.8 144 59.0
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 5.8e-50 201.8 144 59.0
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 9.8e-50 201.1 229 47.2
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 6.4e-49 198.4 126 69.8
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 8.3e-49 198.0 144 57.6
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 8.3e-49 198.0 144 57.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 4.1e-48 195.7 114 77.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 5.4e-48 195.3 182 59.3
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.2e-47 194.1 154 55.2
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.6e-47 193.7 237 48.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.7e-47 193.0 221 47.5
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.6e-47 192.2 177 50.8
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.3e-46 190.7 142 56.3
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-46 190.7 144 54.9
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.3e-46 190.7 144 54.9
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-46 190.3 144 54.9
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 9.5e-45 184.5 162 61.7
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.4e-43 180.6 170 60.0
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 3.1e-43 179.5 177 55.4
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 8.9e-43 177.9 167 57.5
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 8.9e-43 177.9 136 57.4
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.6e-42 176.4 121 60.3
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 2.6e-42 176.4 161 58.4
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 3.4e-42 176.0 225 47.6
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.4e-40 170.6 145 66.9
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 3.5e-39 166.0 142 45.8
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.6e-37 158.7 146 58.9
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.6e-36 156.0 146 58.9
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 3.6e-36 156.0 119 53.8
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.4e-34 149.4 168 49.4
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 3.4e-34 149.4 159 56.6
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 2.9e-33 146.4 145 45.5
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.9e-33 146.4 102 71.6
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.4e-32 143.3 123 61.0
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.1e-31 140.2 221 42.5
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 1.3e-30 137.5 141 41.8
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 3.9e-30 136.0 215 42.8
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.1e-29 134.4 168 50.0
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.5e-29 133.3 141 51.8
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.4e-27 127.5 64 87.5
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.2e-26 124.4 185 36.8
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.0e-26 123.6 167 47.9
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 4.9e-25 119.0 65 81.5
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 9.3e-24 114.8 159 44.0
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.3e-22 110.9 190 38.4
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 4.0e-19 99.4 56 82.1
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 2.4e-16 90.1 111 50.5
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.0e-14 84.7 105 52.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.8e-14 84.0 85 51.8
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 1.8e-11 73.9 64 60.9
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-08 64.3 50 54.0
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 5.5e-08 62.4 48 54.2
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 5.5e-08 62.4 48 54.2
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.3e-06 57.8 65 50.8
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.3e-06 57.8 65 50.8


User provided reference genes

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