Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 4.7e-202 707.6 347 100.0
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 5.8e-168 594.3 356 83.1
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.5e-155 552.4 347 79.5
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 4.8e-146 521.5 295 83.1
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 7.2e-142 507.7 302 80.8
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.1e-141 506.1 372 69.4
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.3e-140 502.7 360 70.8
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 2.5e-139 499.2 345 74.8
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 3.7e-138 495.4 297 79.8
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 2.5e-134 482.6 293 77.1
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 9.4e-134 480.7 313 73.2
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.2e-133 480.3 293 76.5
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.6e-133 479.9 294 77.2
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 4.7e-133 478.4 291 77.0
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.4e-132 476.9 290 78.3
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 2.6e-131 472.6 335 69.3
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 4.4e-131 471.9 282 79.4
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 9.7e-131 470.7 293 75.1
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.7e-130 469.9 322 70.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 1.8e-129 466.5 283 76.7
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.4e-129 466.1 293 76.1
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 5.3e-129 464.9 344 66.9
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 7.0e-129 464.5 315 71.7
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 7.0e-129 464.5 291 74.2
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 7.0e-129 464.5 291 74.2
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.2e-128 463.8 315 71.4
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.5e-128 463.4 348 67.0
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 1.5e-128 463.4 288 74.7
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 2.6e-128 462.6 289 76.1
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 3.5e-128 462.2 317 71.6
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 4.5e-128 461.8 287 76.3
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 5.9e-128 461.5 339 67.0
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.0e-127 460.7 317 71.0
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.0e-127 460.7 334 68.3
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 2.2e-127 459.5 291 73.9
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.9e-127 459.1 293 74.7
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.1e-126 457.2 323 68.1
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 2.5e-126 456.1 230 97.0
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 4.2e-126 455.3 288 73.6
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.2e-125 453.8 294 74.1
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 2.7e-125 452.6 337 65.3
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.7e-125 452.6 333 67.3
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 6.1e-125 451.4 305 69.2
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 6.1e-125 451.4 330 66.1
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 8.0e-125 451.1 302 72.5
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.0e-124 450.7 288 71.9
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.0e-124 450.7 309 70.9
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 3.9e-124 448.7 318 67.6
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 3.9e-124 448.7 320 69.7
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 8.8e-124 447.6 295 71.9
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 2.6e-123 446.0 275 74.9
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 3.3e-123 445.7 305 69.2
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.3e-123 445.7 303 69.0
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 5.7e-123 444.9 349 63.0
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 5.7e-123 444.9 302 71.5
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.3e-122 443.7 292 72.3
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 6.3e-122 441.4 276 75.7
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 1.4e-121 440.3 350 62.9
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.4e-121 440.3 272 76.1
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 3.1e-121 439.1 320 67.2
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.6e-120 436.8 286 70.6
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 4.5e-120 435.3 305 68.2
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 5.9e-120 434.9 305 68.2
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 1.7e-119 433.3 281 74.0
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 2.9e-119 432.6 274 73.4
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 4.2e-118 428.7 295 69.5
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 7.2e-118 427.9 294 67.0
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.2e-117 427.2 362 61.0
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.2e-117 427.2 262 74.8
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 4.7e-117 425.2 360 61.9
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 6.1e-117 424.9 280 72.5
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 5.2e-116 421.8 294 70.7
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.2e-116 421.8 286 69.6
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 8.8e-116 421.0 267 71.9
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 8.8e-116 421.0 275 71.3
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 8.8e-116 421.0 327 64.5
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 2.0e-115 419.9 312 66.0
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 9.7e-115 417.5 304 67.4
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.7e-114 416.8 281 70.1
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.7e-114 416.8 274 71.9
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.8e-114 416.0 338 64.8
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 8.3e-114 414.5 286 67.8
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 8.3e-114 414.5 276 70.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 8.3e-114 414.5 269 71.7
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.4e-113 413.7 347 59.4
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.4e-113 413.7 274 71.5
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.8e-113 413.3 266 72.9
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 3.1e-113 412.5 296 66.9
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 9.1e-113 411.0 310 63.5
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 1.2e-112 410.6 277 67.9
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.6e-112 410.2 286 68.5
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 5.9e-112 408.3 293 69.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.2e-111 406.4 286 66.8
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 5.0e-111 405.2 286 66.4
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 6.5e-111 404.8 267 70.0
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 3.2e-110 402.5 323 60.4
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 2.1e-109 399.8 291 66.0
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 2.7e-109 399.4 260 71.9
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.8e-108 396.7 318 61.3
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 2.3e-108 396.4 271 70.5
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.0e-108 396.0 288 68.1
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 4.0e-108 395.6 296 66.9
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 6.8e-108 394.8 291 65.3
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.7e-106 390.2 301 62.5
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 2.2e-106 389.8 232 79.7
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 2.8e-106 389.4 274 67.2
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.1e-105 387.5 294 66.7
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.0e-103 380.9 326 60.1
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 5.0e-103 378.6 320 61.2
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.1e-102 377.5 330 57.3
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.5e-102 377.1 316 60.8
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.1e-101 371.7 382 53.7
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.4e-99 365.9 336 57.1
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 7.5e-99 364.8 281 64.1
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.7e-98 363.6 271 63.5
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.0e-95 354.4 287 64.1
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.3e-94 349.4 178 96.1
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.8e-93 346.3 245 67.8
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 3.4e-91 339.3 258 58.5
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 4.4e-91 339.0 304 57.9
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 3.7e-90 335.9 258 60.1
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.4e-89 334.0 263 60.8
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 9.2e-89 331.3 262 58.8
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 4.6e-88 328.9 286 57.7
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.3e-87 327.4 280 61.1
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 4.3e-86 322.4 343 49.3
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 9.5e-86 321.2 275 58.2
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 8.9e-84 314.7 185 78.4
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.1e-81 307.8 309 53.1
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.1e-80 303.5 309 52.4
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.1e-80 303.5 178 79.8
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 1.7e-79 300.4 336 49.1
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.3e-79 300.1 199 72.4
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 8.6e-79 298.1 308 51.3
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.3e-78 295.0 320 50.6
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.6e-77 293.9 260 53.1
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 6.2e-77 292.0 319 49.2
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.1e-76 289.7 223 62.3
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 3.4e-75 286.2 176 77.8
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 9.9e-75 284.6 331 46.2
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 1.7e-74 283.9 262 53.8
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.7e-71 273.9 233 61.4
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.9e-71 272.7 264 51.1
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 3.1e-68 263.1 162 75.3
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.9e-66 255.8 187 67.9
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 6.4e-66 255.4 187 67.4
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 8.4e-66 255.0 186 65.1
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 5.4e-65 252.3 222 58.1
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.2e-64 251.1 343 42.3
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.4e-60 236.9 245 51.4
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 4.0e-60 236.1 162 69.8
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 9.0e-60 235.0 485 33.0
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 1.4e-57 227.6 186 60.8
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 3.3e-54 216.5 295 42.0
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.5e-51 207.6 243 42.4
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 3.8e-50 203.0 122 74.6
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 4.2e-49 199.5 113 77.9
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 2.7e-48 196.8 195 52.3
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 3.9e-47 193.0 134 67.2
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.7e-45 186.4 211 46.4
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.3e-42 177.9 106 76.4
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.1e-40 170.6 136 60.3
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.0e-39 168.3 111 68.5
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.3e-37 161.4 127 59.1
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 1.1e-36 158.3 104 71.2
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.0e-36 155.2 186 48.4
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.0e-34 151.8 98 70.4
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.2e-34 150.6 96 71.9
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 2.2e-34 150.6 104 71.2
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.6e-32 144.4 138 55.1
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.3e-26 124.8 88 64.8
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 6.1e-24 115.9 86 58.1
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.5e-19 101.3 60 70.0
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 6.5e-18 95.9 72 58.3
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 1.9e-17 94.4 56 75.0
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.5e-17 94.0 51 84.3
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 1.7e-13 81.3 51 76.5
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.9e-10 70.5 45 73.3
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 3.2e-09 67.0 43 72.1
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 7.2e-09 65.9 50 64.0
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.4e-07 61.6 37 78.4


User provided reference genes

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