Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 4.6e-143 511.1 248 100.0
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 1.9e-141 505.8 248 98.8
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 3.6e-135 485.0 248 94.8
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.7e-113 412.9 249 79.9
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.3e-105 386.7 249 76.3
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 1.0e-97 360.5 256 68.4
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 3.0e-81 305.8 250 60.4
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 3.9e-81 305.4 244 63.1
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.5e-80 303.5 245 60.4
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 3.3e-80 302.4 252 60.3
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 6.2e-79 298.1 245 60.0
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 6.8e-78 294.7 242 59.5
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 2.6e-77 292.7 253 58.5
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 8.3e-76 287.7 254 55.5
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 4.1e-75 285.4 251 55.8
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 3.5e-74 282.3 248 57.3
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 3.5e-74 282.3 230 61.7
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 4.6e-74 282.0 262 53.4
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 7.8e-74 281.2 253 55.7
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 5.1e-73 278.5 246 57.3
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 1.2e-71 273.9 254 55.5
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 8.9e-70 267.7 253 51.8
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 3.4e-69 265.8 228 56.6
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 5.8e-69 265.0 236 55.9
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 7.5e-69 264.6 237 56.5
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 1.7e-68 263.5 242 52.1
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 2.9e-68 262.7 244 52.9
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 6.4e-68 261.5 229 57.2
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 1.9e-67 260.0 234 55.6
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.4e-67 259.6 235 54.0
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 4.1e-67 258.8 252 51.6
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 5.4e-67 258.5 256 50.0
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 5.4e-67 258.5 238 56.3
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 7.1e-67 258.1 245 53.1
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 9.2e-67 257.7 247 52.2
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 3.5e-66 255.8 235 54.0
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 7.8e-66 254.6 230 54.3
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 1.0e-65 254.2 236 54.2
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 5.1e-65 251.9 247 50.2
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 8.6e-65 251.1 244 52.5
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 9.5e-64 247.7 244 50.4
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 1.2e-63 247.3 245 52.7
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.7e-63 245.4 240 52.1
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 1.4e-62 243.8 245 49.8
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 8.9e-62 241.1 240 49.6
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 2.0e-61 240.0 240 52.1
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 2.0e-61 240.0 237 53.6
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 1.3e-60 237.3 246 52.4
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 1.7e-60 236.9 241 49.4
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 2.2e-60 236.5 241 50.2
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 3.8e-60 235.7 244 49.6
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 6.4e-60 235.0 259 46.3
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 6.4e-60 235.0 220 53.6
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 8.4e-60 234.6 241 49.0
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 2.4e-59 233.0 246 48.8
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 7.1e-59 231.5 241 47.3
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 1.2e-58 230.7 252 47.6
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 4.6e-58 228.8 231 48.5
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 1.3e-57 227.3 234 47.4
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 2.3e-57 226.5 235 48.5
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 2.5e-56 223.0 234 46.6
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 3.3e-56 222.6 232 48.3
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 4.3e-56 222.2 244 46.7
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 9.6e-56 221.1 247 48.2
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.2e-55 220.7 248 44.4
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 3.6e-55 219.2 249 47.8
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.6e-55 219.2 229 49.8
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 6.2e-55 218.4 248 44.4
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 8.1e-55 218.0 252 46.4
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 1.4e-54 217.2 237 45.6
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 1.8e-54 216.9 241 45.6
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 1.8e-54 216.9 241 47.7
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 9.0e-54 214.5 247 47.0
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 1.5e-53 213.8 246 46.7
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 1.5e-53 213.8 246 46.7
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 3.4e-53 212.6 244 44.7
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 4.4e-53 212.2 229 49.3
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 9.9e-53 211.1 243 46.5
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 9.9e-53 211.1 246 46.3
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 9.9e-53 211.1 246 46.3
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 3.8e-52 209.1 221 48.4
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 8.4e-52 208.0 229 48.9
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 2.4e-51 206.5 161 63.4
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.1e-51 204.9 227 48.0
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 7.1e-51 204.9 247 44.1
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 7.1e-51 204.9 244 46.3
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 5.6e-48 195.3 184 49.5
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 5.6e-48 195.3 239 46.0
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 2.8e-47 193.0 190 51.1
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 3.1e-46 189.5 240 41.7
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 2.9e-44 183.0 228 44.3
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 8.4e-44 181.4 298 35.9
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 4.2e-43 179.1 167 55.7
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 4.2e-43 179.1 222 48.6
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.1e-42 176.8 240 42.5
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 5.1e-41 172.2 225 39.6
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.6e-39 167.2 175 50.3
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 1.6e-39 167.2 296 34.1
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 5.3e-38 162.2 247 38.9
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 9.0e-38 161.4 160 47.5
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.0e-37 160.2 231 42.0
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 1.3e-36 157.5 267 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 1.6e-34 150.6 230 35.2
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 5.1e-33 145.6 165 47.9
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 1.3e-31 141.0 165 46.7
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 4.5e-29 132.5 165 44.2
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 1.0e-28 131.3 92 67.4
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 8.2e-23 111.7 163 42.3
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 4.1e-22 109.4 87 58.6
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 6.9e-22 108.6 161 38.5
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 9.0e-22 108.2 355 23.1
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 1.3e-20 104.4 99 51.5
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 1.6e-18 97.4 99 51.5
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 3.6e-18 96.3 110 44.5
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 6.1e-18 95.5 87 52.9
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 1.1e-16 91.3 84 48.8
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 2.5e-16 90.1 70 60.0
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 2.5e-16 90.1 146 38.4
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 1.4e-14 84.3 64 57.8
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 4.1e-14 82.8 79 48.1
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 2.2e-12 77.0 108 45.4
SalBow1G6319 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.1e-06 58.2 57 54.4


User provided reference genes

Program Settings