Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g066900.4 Solanum lycopersicum HOM05D006719 ORTHO05D007063 4.1e-46 188.3 149 100.0
Sopen01g028510 Solanum pennellii HOM05D006719 ORTHO05D007063 1.2e-42 176.8 149 96.6
PGSC0003DMG400011322 Solanum tuberosum HOM05D006719 ORTHO05D007063 4.7e-34 148.3 149 89.9
Peaxi162Scf00534g00017 Petunia axillaris HOM05D006719 ORTHO05D007063 9.6e-27 124.0 151 55.6
Peaxi162Scf00024g00041 Petunia axillaris HOM05D006719 ORTHO05D007063 2.1e-21 106.3 140 78.6
vmacro08144 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 7.8e-21 104.4 150 74.0
vmacro22972 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 7.8e-21 104.4 150 74.0
Peaxi162Scf00024g00231 Petunia axillaris HOM05D006719 ORTHO05D007063 8.7e-20 100.9 129 81.4
CSS0008404 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 1.3e-18 97.1 150 69.3
CSS0019267 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 1.3e-18 97.1 150 69.3
Dinv44385 Davidia involucrata HOM05D006719 ORTHO05D007063 1.4e-17 93.6 152 67.8
Actinidia40259 Actinidia chinensis HOM05D006719 ORTHO05D007063 3.1e-17 92.4 150 73.3
Thecc.04G284000 Theobroma cacao HOM05D006719 ORTHO05D007063 9.0e-17 90.9 149 69.1
Duzib151G0940 Durio zibethinus HOM05D006719 ORTHO05D007063 2.0e-16 89.7 149 64.4
COL.COLO4_13881 Corchorus olitorius HOM05D006719 ORTHO05D007063 5.8e-16 88.2 149 67.8
Gorai.011G189600 Gossypium raimondii HOM05D006719 ORTHO05D007063 2.2e-15 86.3 147 68.7
Oeu037752.1 Olea europaea HOM05D006719 ORTHO05D007063 3.8e-15 85.5 147 70.1
MSTRG.21797 Avicennia marina HOM05D006719 ORTHO05D007063 4.9e-15 85.1 147 59.9
Hma1.2p1_2670F.1_g326650 Hydrangea macrophylla HOM05D006719 ORTHO05D007063 6.4e-15 84.7 150 66.7
CAN.G129.20 Capsicum annuum HOM05D006719 ORTHO05D007063 8.4e-15 84.3 138 73.2
Gohir.D10G170100 Gossypium hirsutum HOM05D006719 ORTHO05D007063 1.4e-14 83.6 147 68.0
Nitab4.5_0000960g0100 Nicotiana tabacum HOM05D006719 ORTHO05D007063 2.4e-14 82.8 151 64.9
Duzib212G0625 Durio zibethinus HOM05D006719 ORTHO05D007063 7.1e-14 81.3 149 65.1
Nitab4.5_0005076g0040 Nicotiana tabacum HOM05D006719 ORTHO05D007063 2.7e-13 79.3 149 64.4
Cfa015380 Carpinus fangiana HOM05D006719 ORTHO05D007063 3.5e-13 79.0 150 41.3
VMungo1309G0351 Vigna mungo HOM05D006719 ORTHO05D007063 4.6e-13 78.6 144 63.9
Dinv29768 Davidia involucrata HOM05D001303 ORTHO05D001129 7.9e-13 77.8 130 68.5
GSVIVG01017752001 Vitis vinifera HOM05D006719 ORTHO05D007063 1.0e-12 77.4 155 66.5
Gorai.006G263400 Gossypium raimondii HOM05D006719 ORTHO05D007063 1.3e-12 77.0 150 61.3
MD13G1169300 Malus domestica HOM05D006719 ORTHO05D007063 1.3e-12 77.0 125 70.4
Potri.008G207500 Populus trichocarpa HOM05D006719 ORTHO05D007063 5.1e-12 75.1 133 63.9
Gohir.A10G163700 Gossypium hirsutum HOM05D006719 ORTHO05D007063 1.1e-11 73.9 147 63.9
DCAR_030531 Daucus carota HOM05D006719 ORTHO05D007063 2.5e-11 72.8 141 59.6
Ciclev10006148m.g Citrus clementina HOM05D006719 ORTHO05D007063 3.3e-11 72.4 154 61.7
MD16G1170500 Malus domestica HOM05D006719 ORTHO05D007063 3.3e-11 72.4 124 70.2
Prupe.1G137900 Prunus persica HOM05D006719 ORTHO05D007063 3.3e-11 72.4 128 69.5
Manes.03G194500 Manihot esculenta HOM05D006719 ORTHO05D007063 1.3e-10 70.5 149 59.7
PSO170G6252 Papaver somniferum HOM05D006719 ORTHO05D007063 1.3e-10 70.5 136 64.0
PSO210G7501 Papaver somniferum HOM05D006719 ORTHO05D007063 1.3e-10 70.5 136 66.9
CiPaw.02G083300 Carya illinoinensis HOM05D006719 ORTHO05D007063 2.8e-10 69.3 132 65.2
Gohir.A09G239500 Gossypium hirsutum HOM05D006719 ORTHO05D007063 2.8e-10 69.3 111 71.2
Gohir.D09G240400 Gossypium hirsutum HOM05D006719 ORTHO05D007063 2.8e-10 69.3 111 73.9
THA.LOC104821772 Tarenaya hassleriana HOM05D006719 ORTHO05D007063 2.8e-10 69.3 133 56.4
CANSAT78G1100 Cannabis sativa HOM05D006719 ORTHO05D007063 3.7e-10 68.9 56 67.9
Potri.010G024600 Populus trichocarpa HOM05D006719 ORTHO05D007063 6.2e-10 68.2 150 60.7
HanXRQChr08g0227651 Helianthus annuus HOM05D006719 ORTHO05D007063 8.1e-10 67.8 127 65.4
Carub.0007s2587 Capsella rubella HOM05D006719 ORTHO05D007063 1.8e-09 66.6 146 61.6
ECA233G1326 Erigeron canadensis HOM05D006719 ORTHO05D007063 1.8e-09 66.6 107 72.0
Migut.G00270 Erythranthe guttata HOM05D006719 ORTHO05D007063 1.8e-09 66.6 112 69.6
Psat1g153440 Pisum sativum HOM05D006719 ORTHO05D007063 1.8e-09 66.6 123 67.5
Duzib052G0445 Durio zibethinus HOM05D006719 ORTHO05D007063 4.0e-09 65.5 149 61.1
CiPaw.01G149100 Carya illinoinensis HOM05D006719 ORTHO05D007063 9.0e-09 64.3 151 37.7
Manes.15G012900 Manihot esculenta HOM05D006719 ORTHO05D007063 1.2e-08 63.9 149 59.7
SalBow2G1281 Salvia bowleyana HOM05D006719 ORTHO05D007063 1.5e-08 63.5 63 57.1
Lj6g0006694 Lotus japonicus HOM05D006719 ORTHO05D007063 2.6e-08 62.8 152 63.2
SGA_v2.0_scaffold147G36286 Striga asiatica HOM05D006719 ORTHO05D007063 2.6e-08 62.8 63 60.3
Cpa.g.sc16.165 Carica papaya HOM05D006719 ORTHO05D007063 3.4e-08 62.4 148 62.8
THA.LOC104820261 Tarenaya hassleriana HOM05D006719 ORTHO05D007063 3.4e-08 62.4 146 65.1
Atru.chr4.2828 Acer truncatum HOM05D006719 ORTHO05D007063 4.5e-08 62.0 150 64.0
Nn4g25876 Nelumbo nucifera HOM05D006719 ORTHO05D007063 5.8e-08 61.6 147 53.7
Thhalv10026485m.g Eutrema salsugineum HOM05D006719 ORTHO05D007063 1.3e-07 60.5 137 63.5
RcHm_v2.0_Chr4g0422101 Rosa chinensis HOM05D006719 ORTHO05D007063 1.3e-07 60.5 125 64.0
Zm00001eb137600 Zea mays HOM05D006719 ORTHO05D007063 1.3e-07 60.5 114 53.5
FAN07G2874 Fragaria x ananassa HOM05D006719 ORTHO05D007063 1.7e-07 60.1 156 36.5
Phvul.009G247500 Phaseolus vulgaris HOM05D006719 ORTHO05D007063 2.2e-07 59.7 141 61.7
Actinidia01465 Actinidia chinensis HOM05D006719 ORTHO05D007063 2.9e-07 59.3 66 60.6
unitig_37.g12394 Utricularia gibba HOM05D006719 ORTHO05D007063 2.9e-07 59.3 101 74.3
BraA08t33189Z Brassica rapa HOM05D006719 ORTHO05D007063 3.8e-07 58.9 141 59.6
Ca_01942_v3 Cicer arietinum L. HOM05D006719 ORTHO05D007063 3.8e-07 58.9 131 67.2
Lalb_Chr15g0083521 Lupinus albus HOM05D006719 ORTHO05D007063 3.8e-07 58.9 157 61.8
Glyma.15G147300 Glycine max HOM05D006719 ORTHO05D007063 4.9e-07 58.5 145 64.8
Aqoxy2G03000 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 6.4e-07 58.2 57 61.4
FAN17G0015 Fragaria x ananassa HOM05D006719 ORTHO05D007063 6.4e-07 58.2 160 35.0
TAR365G1095 Trochodendron aralioides HOM05D006719 ORTHO05D007063 6.4e-07 58.2 144 63.2
A08p11980 Brassica napus HOM05D006719 ORTHO05D007063 8.4e-07 57.8 55 60.0
FAN12G0931 Fragaria x ananassa HOM05D006719 ORTHO05D007063 1.1e-06 57.4 153 57.5
ClCG05G006040 Citrullus lanatus HOM05D006719 ORTHO05D007063 1.4e-06 57.0 149 61.7
FvH4_4g17930 Fragaria vesca HOM05D006719 ORTHO05D007063 1.4e-06 57.0 153 57.5
QL06p008791 Quercus lobata HOM05D006719 ORTHO05D007063 1.4e-06 57.0 141 61.7
BcaC07g37932 Brassica carinata HOM05D006719 ORTHO05D007063 1.9e-06 56.6 113 38.1
BolC8t48317H Brassica oleracea HOM05D006719 ORTHO05D007063 1.9e-06 56.6 113 38.1
TAR362G0876 Trochodendron aralioides HOM05D006719 ORTHO05D007063 2.4e-06 56.2 126 62.7
Aqoxy5G00712 Aquilegia oxysepala HOM05D006719 ORTHO05D007063 5.5e-06 55.1 158 56.3


User provided reference genes

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