Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.6e-83 312.0 156 100.0
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 1.1e-81 306.6 156 98.7
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.0e-79 300.1 157 96.8
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 7.3e-70 267.3 154 85.7
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 9.0e-68 260.4 155 83.2
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.8e-66 255.0 155 81.3
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 3.0e-55 218.8 137 81.8
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.2e-42 176.0 133 69.2
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.2e-42 176.0 134 68.7
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.4e-41 173.3 138 67.4
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.2e-37 159.5 126 68.3
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 3.8e-34 148.7 130 60.0
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 5.5e-33 144.8 140 60.0
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 1.2e-32 143.7 131 58.0
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 6.1e-32 141.4 155 46.5
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 7.9e-32 141.0 147 53.1
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 1.1e-30 137.1 158 50.6
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.5e-30 136.0 170 48.2
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 3.3e-30 135.6 154 46.1
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 3.3e-30 135.6 154 53.2
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.7e-29 133.3 153 46.4
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 2.2e-29 132.9 142 47.9
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 4.8e-29 131.7 127 61.4
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.4e-28 130.2 140 47.1
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.8e-28 129.8 151 49.0
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 5.3e-28 128.3 152 50.0
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 6.9e-28 127.9 146 51.4
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.2e-27 127.1 144 48.6
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.5e-27 126.7 142 52.1
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 1.3e-26 123.6 159 49.1
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.3e-26 123.6 147 46.3
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 1.3e-26 123.6 144 47.2
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 2.2e-26 122.9 127 53.5
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 2.2e-26 122.9 153 46.4
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 2.9e-26 122.5 123 54.5
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 3.8e-26 122.1 162 45.7
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.0e-26 121.7 154 48.7
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 5.0e-26 121.7 158 45.6
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.0e-26 121.7 147 45.6
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 6.5e-26 121.3 142 48.6
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 8.5e-26 120.9 131 51.9
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 8.5e-26 120.9 139 48.2
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.1e-25 120.6 151 49.0
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.1e-25 120.6 147 44.9
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.4e-25 120.2 143 47.6
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.4e-25 120.2 168 44.6
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 2.5e-25 119.4 152 48.0
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 3.2e-25 119.0 157 45.2
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.2e-25 118.6 142 47.9
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 4.2e-25 118.6 130 49.2
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 4.2e-25 118.6 154 45.5
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 5.5e-25 118.2 118 55.1
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 7.2e-25 117.9 157 44.6
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 9.4e-25 117.5 154 44.2
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 9.4e-25 117.5 142 46.5
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.2e-24 117.1 128 55.5
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 1.2e-24 117.1 138 51.4
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 2.7e-24 115.9 165 45.5
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.6e-24 115.5 146 47.3
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.6e-24 115.5 146 47.3
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.7e-24 115.2 136 47.8
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.7e-24 115.2 161 46.0
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 7.9e-24 114.4 141 47.5
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.0e-23 114.0 142 47.2
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.0e-23 114.0 147 46.3
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.3e-23 112.8 141 45.4
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.3e-23 112.8 165 42.4
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.3e-23 112.8 152 44.1
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 3.0e-23 112.5 137 46.0
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 3.9e-23 112.1 146 45.2
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 5.1e-23 111.7 132 50.8
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 5.1e-23 111.7 160 42.5
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 1.5e-22 110.2 146 45.2
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.0e-22 109.8 169 40.2
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.0e-22 109.8 149 43.0
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.6e-22 109.4 145 46.9
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.3e-22 109.0 137 46.7
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 3.3e-22 109.0 154 44.8
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 3.3e-22 109.0 134 48.5
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 7.4e-22 107.8 128 43.0
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 9.7e-22 107.5 153 43.1
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 9.7e-22 107.5 131 42.7
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 9.7e-22 107.5 121 48.8
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 9.7e-22 107.5 121 48.8
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.7e-21 106.7 160 45.6
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.2e-21 106.3 146 44.5
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 2.8e-21 105.9 158 44.3
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 2.8e-21 105.9 118 49.2
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.8e-21 105.9 156 43.6
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.8e-21 105.9 145 41.4
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.8e-21 105.9 145 41.4
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 4.8e-21 105.1 101 57.4
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.1e-20 102.1 153 40.5
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 4.1e-20 102.1 127 47.2
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 9.1e-20 100.9 101 53.5
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.5e-19 100.1 123 49.6
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 2.0e-19 99.8 152 42.1
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.6e-19 99.4 128 43.0
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 3.5e-19 99.0 140 45.0
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.5e-19 98.6 148 40.5
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.7e-18 96.7 140 42.1
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.7e-18 96.7 142 40.1
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 2.2e-18 96.3 141 41.8
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 2.9e-18 95.9 141 42.6
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 2.9e-18 95.9 139 46.8
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 2.9e-18 95.9 136 39.7
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 3.8e-18 95.5 155 41.9
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 5.0e-18 95.1 139 43.9
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 5.0e-18 95.1 139 43.9
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 6.5e-18 94.7 141 41.8
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 6.5e-18 94.7 141 41.8
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 6.5e-18 94.7 139 40.3
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 6.5e-18 94.7 139 42.4
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 2.5e-17 92.8 141 41.8
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 5.5e-17 91.7 152 42.1
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.2e-16 90.5 138 41.3
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 1.2e-16 90.5 140 42.1
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.2e-16 90.5 140 42.1
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.6e-16 90.1 140 42.1
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 2.1e-16 89.7 142 40.1
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 2.1e-16 89.7 134 41.0
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 3.6e-16 89.0 142 38.7
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 3.6e-16 89.0 142 38.7
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 3.6e-16 89.0 142 38.7
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 8.0e-16 87.8 140 41.4
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 8.0e-16 87.8 140 41.4
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 1.8e-15 86.7 145 41.4
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 8.8e-15 84.3 140 38.6
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.1e-14 84.0 105 45.7
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.6e-14 82.8 134 35.8
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.8e-12 76.6 93 51.6
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 3.5e-11 72.4 143 35.0
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 7.7e-11 71.2 57 63.2
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 3.8e-10 68.9 85 49.4
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 5.0e-10 68.6 62 51.6
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.5e-09 67.0 151 35.1
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 1.9e-09 66.6 129 35.7
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 5.5e-09 65.1 99 43.4
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.5e-09 65.1 116 36.2
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 9.4e-09 64.3 122 36.1
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 2.1e-08 63.2 94 39.4
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 8.0e-08 61.2 89 43.8
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 8.0e-08 61.2 102 35.3
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.0e-07 60.8 110 35.5
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 3.0e-07 59.3 88 39.8
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 3.0e-07 59.3 89 40.4
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 3.0e-07 59.3 138 31.2
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 6.7e-07 58.2 88 40.9
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 8.8e-07 57.8 122 36.1
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.5e-06 57.0 89 44.9
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.5e-06 57.0 140 32.1
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 3.3e-06 55.8 162 30.9
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 4.4e-06 55.5 93 33.3
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 5.7e-06 55.1 111 37.8


User provided reference genes

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