Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 5.3e-76 287.7 157 100.0
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.1e-70 270.0 157 94.9
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 7.4e-62 240.7 155 85.2
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 4.3e-54 214.9 155 73.5
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 2.8e-53 212.2 154 72.1
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-44 183.7 158 64.6
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.6e-40 168.7 154 57.8
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-38 162.9 155 59.4
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 5.3e-36 154.8 155 57.4
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 2.2e-34 149.4 147 55.1
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 9.4e-33 144.1 156 53.2
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.2e-32 143.7 147 55.8
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.1e-32 142.9 147 55.1
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 2.1e-32 142.9 157 45.2
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 2.7e-32 142.5 152 51.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.0e-31 140.6 160 48.1
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 1.0e-31 140.6 153 54.9
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.8e-31 139.8 157 51.6
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.8e-31 139.8 161 49.7
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.3e-31 139.4 160 47.5
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 6.7e-31 137.9 154 51.3
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 8.8e-31 137.5 152 49.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.2e-30 137.1 148 55.4
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 1.2e-30 137.1 152 49.3
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.5e-30 136.7 146 54.1
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 1.5e-30 136.7 151 52.3
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.5e-30 136.7 150 53.3
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 2.0e-30 136.3 160 46.9
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.3e-30 135.6 157 52.2
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.4e-30 135.2 154 50.6
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 7.5e-30 134.4 162 51.2
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.7e-29 133.3 161 52.2
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.2e-29 132.9 160 45.6
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 2.2e-29 132.9 155 53.5
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 2.8e-29 132.5 155 50.3
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-29 132.1 151 50.3
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.7e-29 132.1 151 50.3
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 3.7e-29 132.1 156 49.4
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 3.7e-29 132.1 158 51.3
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 4.8e-29 131.7 133 59.4
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 4.8e-29 131.7 160 49.4
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 4.8e-29 131.7 154 49.4
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 4.8e-29 131.7 155 53.5
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 6.3e-29 131.3 154 55.2
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.3e-29 131.3 155 54.8
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 8.2e-29 131.0 154 50.0
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 1.1e-28 130.6 156 51.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 1.8e-28 129.8 151 50.3
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-28 129.8 155 54.8
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.4e-28 129.4 155 45.2
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 4.1e-28 128.6 152 50.0
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 5.3e-28 128.3 157 52.2
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 9.1e-28 127.5 157 51.6
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.6e-27 126.7 153 49.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-27 126.3 155 47.7
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 3.5e-27 125.6 159 49.1
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.5e-27 125.2 144 50.0
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 4.5e-27 125.2 156 48.1
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 5.9e-27 124.8 148 52.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 7.7e-27 124.4 130 54.6
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.0e-26 124.0 185 45.4
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.9e-26 122.5 161 49.7
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-26 122.5 155 47.7
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 6.5e-26 121.3 155 45.2
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 8.5e-26 120.9 150 50.0
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.1e-25 120.6 167 47.3
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-25 120.6 150 47.3
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-25 120.6 150 47.3
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-25 119.4 129 55.0
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 3.2e-25 119.0 154 50.0
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 5.5e-25 118.2 150 43.3
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 5.5e-25 118.2 165 46.1
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.1e-24 116.3 155 45.2
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 6.1e-24 114.8 162 44.4
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 6.1e-24 114.8 155 44.5
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 8.0e-24 114.4 162 44.4
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.0e-23 114.0 140 51.4
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.8e-23 113.2 157 45.9
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.2e-23 111.7 120 53.3
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 8.8e-23 110.9 135 53.3
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 3.4e-22 109.0 153 45.8
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.7e-22 108.2 132 47.7
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.7e-22 108.2 156 41.0
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 7.5e-22 107.8 145 48.3
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.2e-21 106.3 140 46.4
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 4.8e-21 105.1 141 48.2
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 6.3e-21 104.8 156 44.9
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.1e-20 104.0 164 41.5
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.4e-20 102.8 156 44.9
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.1e-20 102.4 147 46.3
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.1e-20 102.4 158 44.3
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 4.1e-20 102.1 176 40.3
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 4.1e-20 102.1 156 42.3
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 4.1e-20 102.1 153 41.8
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 7.0e-20 101.3 147 46.9
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.7e-19 99.4 168 39.9
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.7e-19 99.4 168 39.9
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 3.5e-19 99.0 152 44.1
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 4.5e-19 98.6 152 43.4
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 4.5e-19 98.6 117 44.4
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.9e-19 98.2 146 46.6
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.7e-19 97.8 163 42.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 1.0e-18 97.4 148 46.6
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.3e-18 97.1 117 44.4
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 2.3e-18 96.3 148 45.3
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 2.3e-18 96.3 137 46.0
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 2.3e-18 96.3 163 43.6
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 2.3e-18 96.3 155 41.3
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 2.9e-18 95.9 93 57.0
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 5.0e-18 95.1 163 42.9
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 8.6e-18 94.4 151 40.4
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.6e-18 94.4 146 43.2
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 8.6e-18 94.4 136 46.3
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.1e-17 94.0 146 44.5
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.9e-17 93.2 162 40.7
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 1.9e-17 93.2 144 43.8
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.5e-17 92.8 153 41.8
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 3.3e-17 92.4 131 43.5
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 3.3e-17 92.4 162 43.2
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 3.3e-17 92.4 134 38.8
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 5.5e-17 91.7 117 42.7
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 7.2e-17 91.3 152 42.8
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 9.5e-17 90.9 132 44.7
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 1.2e-16 90.5 168 38.1
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 1.2e-16 90.5 168 38.1
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-16 89.0 141 45.4
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.6e-16 89.0 98 54.1
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 4.7e-16 88.6 169 37.9
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 6.1e-16 88.2 141 44.7
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 8.0e-16 87.8 129 45.7
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 1.0e-15 87.4 119 44.5
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 1.4e-15 87.0 88 55.7
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.8e-15 86.7 159 37.7
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 1.8e-15 86.7 157 36.3
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-15 86.7 141 44.7
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 152 41.4
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 141 44.0
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 141 44.0
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.0e-15 85.9 146 40.4
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.0e-15 85.9 147 38.8
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.0e-15 85.9 122 45.9
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 3.0e-15 85.9 141 44.7
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 4.0e-15 85.5 147 38.8
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 5.2e-15 85.1 134 39.6
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-15 84.7 141 44.7
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 6.8e-15 84.7 141 44.7
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.0e-14 83.2 140 40.7
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 2.6e-14 82.8 141 44.0
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 3.4e-14 82.4 141 44.0
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-13 79.3 106 45.3
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 3.7e-13 79.0 149 38.3
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 3.7e-13 79.0 164 40.2
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 3.7e-13 79.0 162 41.4
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 1.1e-12 77.4 127 37.8
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 1.8e-12 76.6 158 37.3
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 2.4e-12 76.3 126 38.9
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 4.1e-12 75.5 103 43.7
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 5.4e-12 75.1 139 38.1
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.6e-11 73.6 134 38.8
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.0e-11 73.2 120 45.8
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.3e-10 70.5 77 54.5
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 1.3e-10 70.5 77 54.5
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 1.7e-10 70.1 129 38.0
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.3e-10 69.7 141 40.4
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.9e-10 69.3 137 35.8
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 8.6e-10 67.8 161 31.7
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.5e-09 67.0 110 36.4
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 1.5e-09 67.0 125 38.4
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 3.3e-09 65.9 101 42.6
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 4.3e-09 65.5 167 32.3
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 5.6e-09 65.1 98 42.9
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 1.2e-08 63.9 176 31.2
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 1.2e-08 63.9 134 35.1
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 1.6e-08 63.5 187 31.6
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 1.6e-08 63.5 143 37.1
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 2.1e-08 63.2 138 35.5
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 6.1e-08 61.6 143 35.0
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 4.0e-07 58.9 124 34.7
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.0e-07 58.9 136 36.8
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 2.6e-06 56.2 189 29.6
ECA234G0512 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.6e-06 56.2 161 35.4
ECA234G0883 Erigeron canadensis HOM05D023078 ORTHO05D003943 2.6e-06 56.2 161 35.4
BcaB04g18929 Brassica carinata HOM05D021100 ORTHO05D021772 7.5e-06 54.7 118 34.7
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 9.8e-06 54.3 150 32.0
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 9.8e-06 54.3 144 27.8


User provided reference genes

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