Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 2668.3 1431 100.0
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 2603.5 1386 98.0
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 2272.7 1388 87.8
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 2245.7 1392 84.8
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 2194.1 1396 82.4
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 2135.1 1364 83.6
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1436.0 1383 57.6
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1431.4 1368 57.4
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1423.3 1342 57.7
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1407.1 1389 56.0
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1389.4 1389 55.7
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1366.7 1374 55.3
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1345.5 1370 54.5
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1340.9 1367 55.2
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1335.5 1432 52.6
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1325.8 1348 55.1
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1313.9 1365 53.9
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1302.3 1364 53.2
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1299.6 1252 57.3
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1288.9 1383 52.4
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1288.9 1379 52.6
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 0.0e+00 1284.2 901 76.9
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1261.1 1379 51.9
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1253.8 1363 51.6
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1253.4 1202 56.4
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1243.0 1396 51.4
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1241.9 1406 50.5
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1241.9 1196 57.4
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1238.8 1382 50.9
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1235.3 1385 51.1
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1231.5 1397 50.4
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1219.5 1382 51.2
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1216.1 1398 50.3
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1214.5 1364 50.2
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1201.8 1381 49.7
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1199.5 1208 53.6
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1194.9 1345 50.2
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1194.1 1412 49.3
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1191.4 1372 50.4
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1188.3 1384 49.5
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1163.3 1386 46.9
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1163.3 1368 49.4
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1155.2 1395 48.5
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1152.9 1199 53.4
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1150.2 1192 53.5
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1148.7 1363 48.1
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1142.9 1380 46.9
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1134.0 1341 47.8
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1126.7 1397 46.4
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1124.8 1377 46.9
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1122.5 1333 47.1
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1117.1 1388 46.2
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1112.4 1398 45.9
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1108.2 1374 46.2
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 2.5e-310 1069.3 1179 52.0
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 2.5e-305 1052.7 1179 52.3
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 8.8e-295 1017.7 1398 43.4
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 2.7e-288 996.1 1045 52.7
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 2.2e-285 986.5 1388 43.6
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 1.4e-276 957.2 993 53.1
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 6.1e-272 941.8 1129 47.6
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 9.2e-268 927.9 861 60.0
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 7.8e-267 924.9 1053 49.8
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 1.1e-260 904.4 1135 46.3
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 1.1e-257 894.4 1389 40.7
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 1.7e-253 880.6 852 58.5
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 1.1e-249 867.8 1340 40.5
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.6e-248 864.0 970 50.4
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 2.2e-245 853.6 1012 48.7
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 5.2e-231 805.8 690 61.3
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 2.1e-227 793.9 1224 40.1
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 6.7e-202 709.1 1404 36.2
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 9.7e-201 705.3 992 43.9
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 6.7e-194 682.6 713 52.9
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 9.7e-185 652.1 1309 35.6
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 2.0e-182 644.4 621 57.2
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 7.0e-175 619.4 1357 33.5
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 7.7e-166 589.3 1339 33.0
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 7.7e-166 589.3 1339 33.0
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 2.4e-127 461.5 611 46.8
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 6.6e-125 453.4 287 87.1
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 2.7e-118 431.4 489 51.3
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 4.2e-103 380.9 1495 26.4
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 2.9e-80 305.1 290 59.0
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 4.8e-75 287.7 362 45.9
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 1.4e-69 269.6 349 46.4
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 2.6e-60 238.8 220 60.5
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 4.7e-54 218.0 163 67.5
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 3.5e-33 148.7 120 66.7
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 1.0e-32 147.1 157 52.9
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 3.6e-30 138.7 285 35.8
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.8e-29 136.3 104 69.2
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 1.2e-25 123.6 103 57.3
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 1.6e-14 86.7 107 49.5
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 2.0e-12 79.7 113 45.1
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 4.1e-10 72.0 277 26.0
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 6.6e-08 64.7 89 43.8


User provided reference genes

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