Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 2.2e-143 512.3 260 100.0
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.3e-132 476.5 260 91.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.9e-127 458.8 261 90.0
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.9e-126 456.1 230 99.6
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.4e-126 455.7 261 89.7
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 6.9e-105 384.4 243 78.2
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 8.9e-105 384.0 223 83.9
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 2.0e-104 382.9 210 88.6
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 2.6e-104 382.5 230 82.6
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 4.4e-104 381.7 217 85.7
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 5.8e-104 381.3 210 88.1
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 4.9e-103 378.3 237 80.2
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 8.4e-103 377.5 225 82.2
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 8.4e-103 377.5 221 83.3
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.1e-102 377.1 213 84.0
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.1e-102 377.1 218 84.9
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.9e-102 376.3 230 81.3
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 2.4e-102 375.9 210 87.1
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 4.2e-102 375.2 230 80.9
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 4.2e-102 375.2 225 81.3
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.2e-101 373.6 225 80.9
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.1e-101 372.9 218 83.5
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.3e-100 370.2 217 82.5
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 3.0e-100 369.0 217 83.4
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 3.9e-100 368.6 223 83.0
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 3.9e-100 368.6 221 81.4
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 5.1e-100 368.2 210 85.7
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 6.6e-100 367.9 217 82.5
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.5e-99 366.7 217 83.9
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.5e-99 366.7 216 82.4
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.5e-99 366.7 223 81.2
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 5.6e-99 364.8 217 81.6
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 9.6e-99 364.0 223 79.4
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.3e-98 363.6 223 79.4
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.3e-98 363.6 223 79.4
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.3e-98 363.6 216 82.4
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.6e-98 363.2 217 82.0
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 2.8e-98 362.5 212 82.5
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 4.8e-98 361.7 210 82.9
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 8.1e-98 360.9 218 78.9
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 8.1e-98 360.9 217 81.1
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 8.1e-98 360.9 218 81.7
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.8e-97 359.8 218 81.2
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.8e-97 359.8 218 78.0
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 1.8e-97 359.8 253 71.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 2.4e-97 359.4 267 70.0
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 3.1e-97 359.0 223 80.3
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 4.0e-97 358.6 217 80.6
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.3e-97 358.2 218 80.7
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 5.3e-97 358.2 237 74.3
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 2.0e-96 356.3 229 77.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.0e-96 356.3 218 79.4
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 2.0e-96 356.3 216 80.1
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.6e-96 355.9 212 80.7
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 7.6e-96 354.4 212 81.1
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 9.9e-96 354.0 262 70.6
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.3e-95 353.6 231 77.5
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 3.8e-95 352.1 217 77.4
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 3.8e-95 352.1 212 78.8
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 3.8e-95 352.1 212 78.8
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.1e-94 350.5 212 78.3
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.4e-94 349.4 212 80.7
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.2e-94 349.0 217 76.5
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 3.2e-94 349.0 210 78.1
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 7.1e-94 347.8 210 78.1
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 7.1e-94 347.8 217 75.6
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 9.3e-94 347.4 217 76.0
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.7e-93 345.9 217 75.6
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.7e-93 345.9 217 75.6
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 5.1e-92 341.7 217 76.0
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 3.3e-91 339.0 211 78.7
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 7.4e-91 337.8 210 76.2
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.3e-90 337.0 210 76.2
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.3e-90 337.0 224 71.9
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 1.6e-90 336.7 217 74.2
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.4e-89 333.6 214 74.8
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.0e-89 332.0 217 73.7
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 6.9e-89 331.3 217 73.3
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 6.9e-89 331.3 217 72.4
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.5e-88 330.1 217 73.3
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.4e-88 328.9 206 76.7
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.4e-88 328.9 217 71.9
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 5.8e-88 328.2 212 74.1
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.8e-88 328.2 217 71.9
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.3e-87 327.0 217 73.3
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.3e-87 327.0 217 73.3
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.3e-87 327.0 212 73.6
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 3.8e-87 325.5 265 63.0
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 3.8e-87 325.5 227 71.8
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 6.4e-87 324.7 220 72.7
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 8.4e-87 324.3 219 71.2
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 8.4e-87 324.3 217 70.5
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.1e-86 323.9 210 71.4
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.9e-86 323.2 217 70.0
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.9e-86 323.2 217 70.0
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.9e-86 323.2 217 70.0
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.9e-86 323.2 220 72.3
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.4e-86 322.8 210 75.2
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 4.2e-86 322.0 217 69.6
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 1.6e-85 320.1 217 69.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.1e-85 319.7 215 73.5
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 4.6e-85 318.5 217 68.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 7.9e-85 317.8 182 84.6
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 5.6e-83 311.6 223 70.9
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.6e-82 310.1 215 70.2
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.6e-82 310.1 211 71.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.4e-81 307.0 211 70.6
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 3.1e-81 305.8 218 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.2e-80 303.9 219 66.7
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.0e-79 300.8 213 70.0
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 3.8e-79 298.9 217 68.2
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 7.9e-77 291.2 176 79.0
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.1e-74 283.1 210 62.9
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.4e-73 280.4 210 64.3
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.0e-73 277.7 179 72.1
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 2.2e-66 256.5 166 81.3
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.2e-64 250.8 140 87.1
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.6e-64 249.6 214 59.3
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.9e-55 219.5 227 52.0
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 8.5e-55 218.0 126 84.1
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 2.7e-53 213.0 135 76.3
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.4e-52 210.7 120 83.3
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 6.7e-52 208.4 120 84.2
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 2.2e-47 193.4 157 64.3
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 4.8e-42 175.6 124 65.3
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.0e-40 170.2 112 73.2
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.0e-39 167.9 130 66.2
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 8.0e-37 158.3 107 69.2
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 8.8e-36 154.8 90 82.2
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.8e-34 149.1 98 75.5
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 8.3e-34 148.3 107 74.8
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.2e-32 144.4 88 73.9
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.7e-31 140.6 92 75.0
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.9e-30 137.1 164 43.3
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 5.5e-30 135.6 202 40.6
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 4.7e-29 132.5 78 78.2
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 6.8e-28 128.6 189 38.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.5e-27 127.5 189 38.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 9.8e-27 124.8 94 67.0
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 6.3e-26 122.1 181 37.6
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.4e-25 120.2 215 34.9
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.7e-24 116.7 197 38.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 2.3e-23 113.6 216 35.2
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 3.8e-23 112.8 71 69.0
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.9e-22 110.5 88 63.6
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 7.3e-22 108.6 210 35.7
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 7.3e-22 108.6 75 70.7
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.0e-20 104.8 95 61.1
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.8e-20 104.0 216 32.4
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.2e-19 101.3 60 78.3
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 4.4e-19 99.4 58 82.8
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.3e-18 97.8 63 74.6
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.9e-18 96.7 170 32.9
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 1.8e-17 94.0 98 54.1
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 3.2e-17 93.2 55 80.0
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 1.0e-15 88.2 59 72.9
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 3.0e-15 86.7 70 61.4
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 6.6e-15 85.5 68 61.8
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 4.7e-13 79.3 43 86.0
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 2.6e-11 73.6 68 54.4
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 2.6e-11 73.6 72 54.2
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 4.4e-11 72.8 65 55.4
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 5.8e-11 72.4 57 64.9
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 5.8e-11 72.4 64 56.2
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 9.8e-11 71.6 57 63.2
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 2.2e-10 70.5 57 61.4
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.2e-10 70.5 59 59.3
Solyc01g066455.1 Solanum lycopersicum HOM05D004309 ORTHO05D392542 2.9e-10 70.1 34 97.1
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 3.2e-09 66.6 39 82.1
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 5.0e-07 59.3 48 60.4


User provided reference genes

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