Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 2.0e-141 505.8 260 100.0
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 3.6e-138 495.0 260 97.7
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 2.2e-135 485.7 260 96.2
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 2.1e-122 442.6 261 88.9
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.3e-115 418.7 264 85.2
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.7e-114 414.8 264 84.1
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 5.2e-105 384.8 260 78.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.1e-86 323.9 261 65.1
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.9e-83 313.2 262 65.6
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 2.5e-83 312.8 269 63.6
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.5e-80 303.5 265 60.4
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 4.5e-80 302.0 269 59.5
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 4.5e-80 302.0 266 60.9
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.7e-79 300.1 263 60.8
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.1e-78 297.4 268 58.2
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.9e-78 296.6 270 59.6
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 2.5e-78 296.2 263 60.8
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 3.2e-78 295.8 261 61.3
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 7.1e-78 294.7 267 59.2
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 3.5e-77 292.4 246 62.6
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 6.7e-76 288.1 267 58.4
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 8.7e-76 287.7 264 58.3
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 1.1e-75 287.3 262 58.4
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.5e-75 287.0 239 63.2
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 2.5e-75 286.2 266 58.3
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 4.3e-75 285.4 253 61.3
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 9.7e-75 284.3 260 59.6
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.3e-74 283.9 269 59.9
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 1.3e-74 283.9 262 58.8
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 2.1e-74 283.1 239 59.8
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 4.8e-74 282.0 268 57.5
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.4e-73 280.4 268 59.3
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.4e-73 280.4 269 58.4
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 1.4e-73 280.4 237 62.4
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 3.1e-73 279.3 271 57.6
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 4.1e-73 278.9 247 59.9
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 4.1e-73 278.9 268 57.1
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 1.2e-72 277.3 269 58.0
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.2e-72 277.3 262 56.5
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 1.5e-72 276.9 250 58.8
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 2.0e-72 276.6 246 61.8
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.5e-72 275.4 247 59.5
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.7e-71 273.5 274 56.2
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.7e-71 273.5 274 56.2
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.9e-71 272.7 238 60.1
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 5.0e-71 271.9 234 64.1
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 5.0e-71 271.9 270 55.9
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 5.0e-71 271.9 241 58.9
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 5.0e-71 271.9 243 58.0
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 8.5e-71 271.2 247 59.1
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.1e-70 270.8 269 55.8
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.1e-70 270.8 259 57.5
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.4e-70 270.4 264 56.8
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.9e-70 270.0 236 59.7
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 3.2e-70 269.2 240 58.3
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 3.2e-70 269.2 242 58.3
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 4.2e-70 268.9 268 55.2
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 5.5e-70 268.5 244 57.8
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 7.2e-70 268.1 239 58.2
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 7.2e-70 268.1 239 58.2
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 9.3e-70 267.7 247 58.3
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 2.1e-69 266.5 246 58.1
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 6.1e-69 265.0 244 58.2
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 7.9e-69 264.6 246 57.7
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.3e-68 263.8 270 55.9
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.8e-68 263.5 246 57.7
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.9e-68 262.3 238 57.6
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.9e-68 262.3 238 57.6
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 5.1e-68 261.9 263 54.8
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 5.1e-68 261.9 247 57.5
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 8.7e-68 261.2 262 56.1
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.5e-67 260.4 247 56.7
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.9e-67 260.0 226 59.3
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.9e-67 260.0 241 58.9
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 2.5e-67 259.6 240 58.8
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 3.3e-67 259.2 225 59.6
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 4.3e-67 258.8 240 58.3
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 3.7e-66 255.8 273 53.5
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 8.2e-66 254.6 259 52.5
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 6.9e-65 251.5 259 54.4
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 6.9e-65 251.5 259 54.1
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 9.1e-65 251.1 227 59.0
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 1.5e-64 250.4 246 56.1
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.5e-64 250.4 239 56.1
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 1.5e-64 250.4 240 58.3
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.0e-64 250.0 235 56.6
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 2.6e-64 249.6 235 57.4
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 3.4e-64 249.2 229 57.6
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 3.4e-64 249.2 240 56.7
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 5.9e-64 248.4 246 55.7
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 5.9e-64 248.4 246 55.7
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 7.7e-64 248.1 239 54.4
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.0e-63 247.7 259 52.9
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.7e-63 246.9 246 55.3
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 2.2e-63 246.5 246 54.9
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 1.4e-62 243.8 235 55.3
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 4.2e-62 242.3 259 52.1
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 5.5e-62 241.9 249 55.0
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 9.4e-62 241.1 249 54.6
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.1e-61 240.0 268 54.5
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 2.7e-61 239.6 249 54.6
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 6.1e-61 238.4 237 55.7
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 7.9e-61 238.0 238 57.1
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.1e-60 235.3 202 62.4
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 1.5e-59 233.8 262 53.4
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.4e-59 231.5 274 54.7
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 9.7e-59 231.1 250 51.2
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.4e-57 226.5 281 53.4
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 5.3e-57 225.3 213 59.6
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 1.2e-56 224.2 211 60.2
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 5.9e-56 221.9 251 52.6
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.9e-54 216.9 243 52.3
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 4.2e-54 215.7 270 50.4
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.2e-53 214.2 227 52.4
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 4.7e-53 212.2 218 52.8
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.8e-52 208.0 208 52.9
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 3.3e-51 206.1 208 54.8
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 2.6e-48 196.4 257 47.1
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.2e-45 187.6 232 47.4
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 6.1e-45 185.3 185 54.6
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 5.3e-41 172.2 154 53.9
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 2.0e-40 170.2 244 43.0
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 7.2e-38 161.8 230 43.0
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.3e-36 156.8 155 62.6
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.0e-36 156.4 121 58.7
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 4.4e-35 152.5 134 61.2
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.5e-32 142.9 169 47.9
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 4.5e-32 142.5 150 53.3
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.3e-31 140.2 228 34.2
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 1.5e-30 137.5 231 38.5
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.5e-30 137.5 226 35.4
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 3.6e-29 132.9 209 38.8
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.2e-27 127.9 140 48.6
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.4e-27 125.9 226 32.7
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 1.7e-26 124.0 233 36.5
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 1.1e-25 121.3 216 36.6
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 7.3e-14 82.0 70 55.7
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.4e-11 73.2 71 62.0
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 1.0e-07 61.6 88 45.5
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 1.0e-07 61.6 88 45.5
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.1e-06 58.2 164 29.9
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 1.9e-06 57.4 79 36.7
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 9.5e-06 55.1 50 64.0


User provided reference genes

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