Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 3.1e-69 265.0 132 100.0
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 4.2e-34 148.3 83 89.2
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 4.5e-28 128.3 83 77.1
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 4.5e-28 128.3 83 77.1
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 4.5e-28 128.3 83 77.1
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 2.7e-25 119.0 86 70.9
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.4e-24 116.7 86 69.8
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 3.9e-24 115.2 73 75.3
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 6.7e-24 114.4 68 80.9
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 6.7e-24 114.4 77 72.7
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 8.8e-24 114.0 69 79.7
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 2.0e-23 112.8 79 70.9
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.6e-23 112.5 82 70.7
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 5.7e-23 111.3 73 75.3
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 5.7e-23 111.3 77 71.4
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 9.7e-23 110.5 73 74.0
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 8.2e-22 107.5 76 68.4
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 8.2e-22 107.5 76 68.4
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 1.1e-21 107.1 78 69.2
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.1e-21 107.1 73 69.9
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.1e-21 107.1 73 69.9
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 1.1e-21 107.1 77 67.5
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.4e-21 106.7 76 67.1
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.4e-21 106.7 73 72.6
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-21 106.7 73 68.5
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 3.1e-21 105.5 78 69.2
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.1e-21 105.5 69 73.9
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 4.1e-21 105.1 75 66.7
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.1e-21 105.1 78 69.2
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 4.1e-21 105.1 77 67.5
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 5.3e-21 104.8 75 65.3
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 5.3e-21 104.8 62 79.0
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 6.9e-21 104.4 75 66.7
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 6.9e-21 104.4 68 69.1
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.1e-21 104.0 78 67.9
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.2e-20 103.6 76 64.5
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.2e-20 103.6 62 79.0
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.2e-20 103.6 68 70.6
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.5e-20 103.2 64 75.0
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.5e-20 103.2 77 64.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.0e-20 102.8 74 70.3
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.6e-20 102.4 73 64.4
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 3.4e-20 102.1 74 64.9
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 3.4e-20 102.1 73 68.5
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 3.4e-20 102.1 77 64.9
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 5.9e-20 101.3 74 64.9
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 5.9e-20 101.3 74 68.9
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 5.9e-20 101.3 77 62.3
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.0e-19 100.5 76 61.8
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.0e-19 100.5 74 66.2
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.0e-19 100.5 76 65.8
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.3e-19 100.1 63 73.0
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.3e-19 100.1 87 54.0
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.3e-19 100.1 63 74.6
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.2e-19 99.4 82 58.5
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.2e-19 99.4 82 58.5
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 2.2e-19 99.4 81 64.2
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.2e-19 99.4 81 64.2
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 2.2e-19 99.4 81 64.2
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.2e-19 99.4 81 64.2
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 2.9e-19 99.0 75 62.7
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.9e-19 99.0 63 74.6
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 3.8e-19 98.6 71 67.6
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 3.8e-19 98.6 63 74.6
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 3.8e-19 98.6 81 61.7
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 3.8e-19 98.6 63 74.6
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 3.8e-19 98.6 63 74.6
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 5.0e-19 98.2 70 71.4
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 5.0e-19 98.2 63 73.0
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 5.0e-19 98.2 74 63.5
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 6.5e-19 97.8 73 65.8
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 6.5e-19 97.8 63 73.0
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.4e-18 96.7 76 61.8
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 1.4e-18 96.7 73 65.8
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.4e-18 96.7 73 65.8
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.4e-18 96.7 76 64.5
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.9e-18 96.3 75 58.7
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.5e-18 95.9 76 61.8
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 3.2e-18 95.5 62 72.6
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 4.2e-18 95.1 68 67.6
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 4.2e-18 95.1 62 72.6
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 4.2e-18 95.1 73 64.4
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 5.5e-18 94.7 66 74.2
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 7.2e-18 94.4 63 65.1
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.6e-17 93.2 68 64.7
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.6e-17 93.2 73 63.0
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.6e-17 93.2 78 65.4
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 2.1e-17 92.8 74 66.2
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.7e-17 92.4 63 74.6
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 3.6e-17 92.0 69 65.2
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 3.6e-17 92.0 78 57.7
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.6e-17 92.0 78 57.7
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 4.7e-17 91.7 62 71.0
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 4.7e-17 91.7 62 71.0
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.7e-17 91.7 68 63.2
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 4.7e-17 91.7 67 65.7
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.4e-16 90.1 68 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.8e-16 89.7 78 59.0
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.3e-16 89.4 62 69.4
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 3.9e-16 88.6 70 61.4
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 5.2e-16 88.2 59 71.2
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 6.7e-16 87.8 62 66.1
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.8e-16 87.4 68 61.8
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.5e-15 86.7 112 47.3
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-15 86.3 68 60.3
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.6e-15 85.9 69 63.8
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 4.4e-15 85.1 80 51.2
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.4e-15 85.1 80 51.2
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.7e-14 82.0 59 71.2
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 4.8e-14 81.6 69 59.4
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.8e-14 81.6 63 60.3
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.8e-14 81.6 63 60.3
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.1e-13 80.5 63 58.7
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.1e-13 80.5 63 60.3
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.1e-13 80.5 95 45.3
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.4e-13 80.1 63 58.7
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 3.1e-13 79.0 49 75.5
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 5.9e-12 74.7 61 55.7
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.7e-09 65.9 51 62.7
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 3.7e-06 55.5 43 58.1


User provided reference genes

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