Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g057250.2 Solanum lycopersicum HOM05D002272 ORTHO05D005405 4.5e-32 140.6 68 100.0
MSTRG.10168 Avicennia marina HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Cpa.g.sc146.23 Carica papaya HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Cc03_g00130 Coffea canephora HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
DCAR_002551 Daucus carota HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Dinv18018 Davidia involucrata HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Dinv29507 Davidia involucrata HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Lj6A701G45 Lonicera japonica HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Nitab4.5_0001437g0040 Nicotiana tabacum HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Nitab4.5_0002322g0100 Nicotiana tabacum HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Nitab4.5_0005622g0030 Nicotiana tabacum HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
SalBow8G2239 Salvia bowleyana HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Sopen01g021790 Solanum pennellii HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
THA.LOC104815360 Tarenaya hassleriana HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Thecc.04G313100 Theobroma cacao HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
unitig_8.g3105 Utricularia gibba HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
GSVIVG01017688001 Vitis vinifera HOM05D002272 ORTHO05D005405 5.2e-12 73.9 36 94.4
Ciclev10007196m.g Citrus clementina HOM05D002272 ORTHO05D005405 8.8e-12 73.2 36 91.7
COL.COLO4_34516 Corchorus olitorius HOM05D002272 ORTHO05D005405 8.8e-12 73.2 36 91.7
Eucgr.H04124 Eucalyptus grandis HOM05D002272 ORTHO05D005405 8.8e-12 73.2 36 91.7
SGA_v2.0_scaffold157G37389 Striga asiatica HOM05D002272 ORTHO05D005405 1.5e-11 72.4 33 100.0
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 2.0e-11 72.0 36 91.7
Peaxi162Scf00126g01027 Petunia axillaris HOM05D002272 ORTHO05D005405 2.0e-11 72.0 36 91.7
Solyc03g117320.4 Solanum lycopersicum HOM05D002272 ORTHO05D005405 2.0e-11 72.0 36 91.7
Sopen03g036210 Solanum pennellii HOM05D002272 ORTHO05D005405 2.0e-11 72.0 36 91.7
PGSC0003DMG400014202 Solanum tuberosum HOM05D002272 ORTHO05D005405 2.0e-11 72.0 36 91.7
Actinidia01065 Actinidia chinensis HOM05D002272 ORTHO05D005405 2.6e-11 71.6 36 91.7
Actinidia18507 Actinidia chinensis HOM05D002272 ORTHO05D005405 2.6e-11 71.6 36 91.7
Migut.O00400 Erythranthe guttata HOM05D002272 ORTHO05D005405 2.6e-11 71.6 36 88.9
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla HOM05D002272 ORTHO05D005405 2.6e-11 71.6 36 91.7
Duzib212G0306 Durio zibethinus HOM05D002272 ORTHO05D005405 3.4e-11 71.2 36 88.9
Gohir.A02G058500 Gossypium hirsutum HOM05D002272 ORTHO05D005405 3.4e-11 71.2 36 91.7
Gohir.D02G064300 Gossypium hirsutum HOM05D002272 ORTHO05D005405 3.4e-11 71.2 36 91.7
Gorai.005G072600 Gossypium raimondii HOM05D002272 ORTHO05D005405 3.4e-11 71.2 36 91.7
Nn4g26701 Nelumbo nucifera HOM05D002272 ORTHO05D005405 4.4e-11 70.9 36 88.9
CAN.G407.30 Capsicum annuum HOM05D002272 ORTHO05D005405 5.7e-11 70.5 39 87.2
TAR636G1706 Trochodendron aralioides HOM05D002272 ORTHO05D005405 9.8e-11 69.7 36 88.9
Atru.chr4.3151 Acer truncatum HOM05D002272 ORTHO05D005405 1.7e-10 68.9 36 91.7
ATR0796G018 Amborella trichopoda HOM05D002272 ORTHO05D005405 1.7e-10 68.9 36 88.9
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea HOM05D002272 ORTHO05D005405 1.7e-10 68.9 36 91.7
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea HOM05D002272 ORTHO05D005405 1.7e-10 68.9 36 91.7
CSS0028739 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 1.7e-10 68.9 36 88.9
Manes.02G178300 Manihot esculenta HOM05D002272 ORTHO05D005405 1.7e-10 68.9 36 91.7
Prupe.1G105200 Prunus persica HOM05D002272 ORTHO05D005405 1.7e-10 68.9 36 91.7
Hund14390 Selenicereus undatus HOM05D002272 ORTHO05D005405 1.7e-10 68.9 36 91.7
Carub.0003s1719 Capsella rubella HOM05D002272 ORTHO05D005405 2.8e-10 68.2 36 86.1
Lsat_1_v5_gn_6_118081 Lactuca sativa HOM05D002272 ORTHO05D005405 2.8e-10 68.2 36 88.9
CSS0045814 Camellia sinensis var. sinensis HOM05D002272 ORTHO05D005405 4.8e-10 67.4 36 86.1
MBI13_g24903_MAGBIO Magnolia biondii HOM05D002272 ORTHO05D005405 6.3e-10 67.0 36 88.9
TAR365G0404 Trochodendron aralioides HOM05D002272 ORTHO05D005405 8.3e-10 66.6 36 86.1
Os01g0251100 Oryza sativa ssp. japonica HOM05D002272 ORTHO05D005405 1.1e-09 66.2 37 83.8
Sc18g0007250 Simmondsia chinensis HOM05D002272 ORTHO05D005405 1.4e-09 65.9 36 86.1
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.8e-09 65.5 36 83.3
arahy.Tifrunner.gnm1.ann1.IDQN4N Arachis hypogaea HOM05D002272 ORTHO05D005405 2.4e-09 65.1 36 88.9
arahy.Tifrunner.gnm1.ann1.VQU8DB Arachis hypogaea HOM05D002272 ORTHO05D005405 3.1e-09 64.7 39 82.1
AT3G17465 Arabidopsis thaliana HOM05D002272 ORTHO05D005405 5.4e-09 63.9 36 86.1
ClCG05G006870 Citrullus lanatus HOM05D002272 ORTHO05D005405 5.4e-09 63.9 36 86.1
Migut.G00004 Erythranthe guttata HOM05D002272 ORTHO05D005405 5.4e-09 63.9 36 83.3
Pp3c23_18210 Physcomitrium patens HOM05D002272 ORTHO05D005405 7.0e-09 63.5 36 80.6
QL06p014217 Quercus lobata HOM05D002272 ORTHO05D005405 7.0e-09 63.5 36 86.1
HPP92_026061 Vanilla planifolia HOM05D002272 ORTHO05D005405 1.2e-08 62.8 36 86.1
AL3G30550 Arabidopsis lyrata HOM05D002272 ORTHO05D005405 1.6e-08 62.4 36 83.3
Zm00001eb333790 Zea mays HOM05D002272 ORTHO05D005405 1.6e-08 62.4 73 47.9
SMO119G0282 Selaginella moellendorffii HOM05D002272 ORTHO05D005405 2.0e-08 62.0 38 73.7
MD13G1139500 Malus domestica HOM05D002272 ORTHO05D005405 2.7e-08 61.6 36 83.3
MD16G1136200 Malus domestica HOM05D002272 ORTHO05D005405 2.7e-08 61.6 36 83.3
Oeu037631.1 Olea europaea HOM05D002272 ORTHO05D005405 2.7e-08 61.6 33 87.9
HanXRQChr05g0149261 Helianthus annuus HOM05D002272 ORTHO05D005405 4.5e-08 60.8 36 83.3
RcHm_v2.0_Chr4g0427531 Rosa chinensis HOM05D002272 ORTHO05D005405 5.9e-08 60.5 36 77.8
Mapoly0162s0018 Marchantia polymorpha HOM05D002272 ORTHO05D005405 1.0e-07 59.7 36 72.2
Thhalv10021142m.g Eutrema salsugineum HOM05D002272 ORTHO05D005405 1.3e-07 59.3 36 75.0
CARHR092790 Cardamine hirsuta HOM05D002272 ORTHO05D005405 2.9e-07 58.2 36 75.0
VMungo0331G0401 Vigna mungo HOM05D002272 ORTHO05D005405 3.8e-07 57.8 36 75.0
ECA246G1461 Erigeron canadensis HOM05D002272 ORTHO05D005405 5.0e-07 57.4 36 75.0
Sed0028101 Sechium edule HOM05D002272 ORTHO05D005405 5.0e-07 57.4 36 80.6
Cre01.g022250 Chlamydomonas reinhardtii HOM05D002272 ORTHO05D005405 6.6e-07 57.0 36 69.4
Sp3g15640 Schrenkiella parvula HOM05D002272 ORTHO05D005405 6.6e-07 57.0 36 72.2
Ah.07g201130 Amaranthus hybridus HOM05D002272 ORTHO05D005405 1.1e-06 56.2 37 75.7
BcaB04g20838 Brassica carinata HOM05D002272 ORTHO05D005405 1.5e-06 55.8 36 72.2
BcaB06g25841 Brassica carinata HOM05D002272 ORTHO05D005405 1.5e-06 55.8 36 72.2
A01p36790 Brassica napus HOM05D002272 ORTHO05D005405 1.5e-06 55.8 36 72.2
C01p46710 Brassica napus HOM05D002272 ORTHO05D005405 1.5e-06 55.8 36 72.2
BolC1t04639H Brassica oleracea HOM05D002272 ORTHO05D005405 1.5e-06 55.8 36 72.2
BraA01t03740Z Brassica rapa HOM05D002272 ORTHO05D005405 1.5e-06 55.8 36 72.2
Lj3g0022905 Lotus japonicus HOM05D002272 ORTHO05D005405 1.5e-06 55.8 37 70.3
CiPaw.01G129200 Carya illinoinensis HOM05D002272 ORTHO05D005405 1.9e-06 55.5 36 75.0
Nitab4.5_0006648g0050 Nicotiana tabacum HOM05D002272 ORTHO05D005405 1.9e-06 55.5 28 92.9
FvH4_4g21510 Fragaria vesca HOM05D002272 ORTHO05D005405 3.3e-06 54.7 36 72.2
FAN07G0753 Fragaria x ananassa HOM05D002272 ORTHO05D005405 3.3e-06 54.7 36 72.2
FAN12G3762 Fragaria x ananassa HOM05D002272 ORTHO05D005405 3.3e-06 54.7 36 72.2
FAN17G2520 Fragaria x ananassa HOM05D002272 ORTHO05D005405 3.3e-06 54.7 36 72.2
SalBow5G3525 Salvia bowleyana HOM05D002272 ORTHO05D005405 3.3e-06 54.7 39 71.8
EL10Ac5g11978 Beta vulgaris HOM05D002272 ORTHO05D005405 4.2e-06 54.3 37 67.6
AUR62007379 Chenopodium quinoa HOM05D002272 ORTHO05D005405 4.2e-06 54.3 36 72.2
AUR62018609 Chenopodium quinoa HOM05D002272 ORTHO05D005405 4.2e-06 54.3 36 72.2
PSO210G1506 Papaver somniferum HOM05D002272 ORTHO05D005405 4.2e-06 54.3 36 72.2
Phvul.005G012100 Phaseolus vulgaris HOM05D002272 ORTHO05D005405 7.2e-06 53.5 28 89.3
CANSAT78G0846 Cannabis sativa HOM05D002272 ORTHO05D005405 9.5e-06 53.1 36 72.2


User provided reference genes

Program Settings