Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.4e-47 192.6 92 100.0
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.4e-36 156.0 99 78.8
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 1.4e-36 156.0 99 78.8
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 2.4e-36 155.2 99 77.8
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 4.1e-36 154.5 99 77.8
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 1.6e-35 152.5 96 78.1
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 4.5e-35 151.0 99 75.8
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 2.9e-34 148.3 99 74.7
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 6.5e-34 147.1 96 76.0
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 4.2e-33 144.4 99 72.7
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 5.5e-33 144.1 99 72.7
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 7.2e-33 143.7 99 72.7
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 1.2e-32 142.9 96 71.9
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 2.1e-32 142.1 99 70.7
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 2.1e-32 142.1 96 72.9
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 6.1e-32 140.6 96 71.9
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 6.1e-32 140.6 96 72.9
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 8.0e-32 140.2 96 72.9
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.0e-31 139.8 98 70.4
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 1.0e-31 139.8 97 70.1
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 1.0e-31 139.8 96 71.9
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 1.0e-31 139.8 96 71.9
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 1.4e-31 139.4 95 69.5
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 1.8e-31 139.0 97 69.1
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 2.3e-31 138.7 96 69.8
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.3e-31 138.7 95 69.5
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 3.0e-31 138.3 96 71.9
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 3.0e-31 138.3 99 69.7
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 5.2e-31 137.5 95 70.5
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 5.2e-31 137.5 96 70.8
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.2e-31 137.5 96 70.8
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.2e-31 137.5 96 70.8
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.2e-31 137.5 96 70.8
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 5.2e-31 137.5 96 70.8
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 5.2e-31 137.5 91 73.6
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 5.2e-31 137.5 96 70.8
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 5.2e-31 137.5 97 70.1
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 6.7e-31 137.1 96 69.8
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 8.8e-31 136.7 97 70.1
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.2e-30 136.3 94 70.2
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 1.2e-30 136.3 96 70.8
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.2e-30 136.3 91 72.5
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.5e-30 136.0 95 69.5
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 1.5e-30 136.0 96 71.9
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 1.5e-30 136.0 97 69.1
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 1.5e-30 136.0 96 67.7
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 2.0e-30 135.6 97 67.0
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 2.0e-30 135.6 97 70.1
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 2.0e-30 135.6 96 70.8
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 2.0e-30 135.6 97 69.1
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 2.0e-30 135.6 96 70.8
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 2.0e-30 135.6 95 69.5
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 3.3e-30 134.8 100 66.0
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 3.3e-30 134.8 97 68.0
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 3.3e-30 134.8 97 69.1
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 7.5e-30 133.7 95 70.5
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 7.5e-30 133.7 97 68.0
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 1.3e-29 132.9 96 68.8
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.3e-29 132.9 95 67.4
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 1.3e-29 132.9 96 69.8
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.3e-29 132.9 99 69.7
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 1.3e-29 132.9 96 70.8
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 2.2e-29 132.1 96 67.7
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 2.2e-29 132.1 99 67.7
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 2.2e-29 132.1 96 67.7
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 2.2e-29 132.1 95 68.4
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 2.2e-29 132.1 95 68.4
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 2.2e-29 132.1 96 68.8
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 2.2e-29 132.1 96 67.7
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 2.2e-29 132.1 95 67.4
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 3.7e-29 131.3 96 66.7
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 3.7e-29 131.3 95 67.4
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 3.7e-29 131.3 97 68.0
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 6.3e-29 130.6 96 66.7
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 6.3e-29 130.6 96 66.7
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 6.3e-29 130.6 72 83.3
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 6.3e-29 130.6 97 64.9
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 8.2e-29 130.2 96 69.8
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 8.2e-29 130.2 97 66.0
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 8.2e-29 130.2 97 66.0
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 8.2e-29 130.2 97 66.0
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 8.2e-29 130.2 97 66.0
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 1.1e-28 129.8 96 66.7
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.1e-28 129.8 107 61.7
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 1.1e-28 129.8 95 67.4
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.4e-28 129.4 91 69.2
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.4e-28 129.4 95 67.4
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 2.4e-28 128.6 96 65.6
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 4.1e-28 127.9 97 66.0
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 4.1e-28 127.9 95 68.4
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 4.1e-28 127.9 90 68.9
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 9.1e-28 126.7 98 65.3
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 9.1e-28 126.7 96 66.7
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 1.2e-27 126.3 99 65.7
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 2.0e-27 125.6 95 66.3
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 3.5e-27 124.8 90 68.9
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 5.9e-27 124.0 90 70.0
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 2.9e-26 121.7 81 74.1
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 2.9e-26 121.7 98 65.3
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 1.1e-25 119.8 102 61.8
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 9.4e-25 116.7 72 72.2
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 2.1e-24 115.5 96 61.5
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 1.0e-23 113.2 96 59.4
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 1.4e-23 112.8 81 70.4
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 1.4e-23 112.8 81 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 3.4e-22 108.2 95 56.8
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 1.2e-19 99.8 97 51.5
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 2.0e-19 99.0 96 52.1
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 3.5e-19 98.2 89 51.7
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 9.5e-17 90.1 91 51.6
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 5.7e-14 80.9 60 56.7
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 5.7e-14 80.9 69 50.7
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 1.1e-12 76.6 102 40.2
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 3.6e-08 61.6 43 62.8


User provided reference genes

Program Settings