Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g056910.1 Solanum lycopersicum HOM05D002996 ORTHO05D003536 8.5e-37 156.4 73 100.0
PGSC0003DMG400014175 Solanum tuberosum HOM05D002996 ORTHO05D003536 4.1e-15 84.3 52 73.1
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 3.3e-12 74.7 42 81.0
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 3.3e-12 74.7 42 81.0
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 3.3e-12 74.7 42 81.0
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 3.3e-12 74.7 42 81.0
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 5.6e-12 73.9 42 81.0
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 7.3e-12 73.6 42 78.6
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.6e-11 72.4 42 78.6
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 2.1e-11 72.0 42 76.2
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 2.1e-11 72.0 42 76.2
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 2.1e-11 72.0 42 76.2
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
CiPaw.03G068900 Carya illinoinensis HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 2.8e-11 71.6 42 78.6
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 3.6e-11 71.2 42 78.6
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 3.6e-11 71.2 42 78.6
Lj2C435G4 Lonicera japonica HOM05D002996 ORTHO05D003536 3.6e-11 71.2 42 78.6
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 3.6e-11 71.2 42 78.6
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 3.6e-11 71.2 42 78.6
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 4.7e-11 70.9 42 73.8
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 4.7e-11 70.9 42 76.2
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 6.1e-11 70.5 42 76.2
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 8.0e-11 70.1 42 73.8
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 8.0e-11 70.1 42 73.8
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 8.0e-11 70.1 42 73.8
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 8.0e-11 70.1 42 73.8
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 8.0e-11 70.1 42 76.2
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 8.0e-11 70.1 42 73.8
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 76.2
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 73.8
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 73.8
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 76.2
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 76.2
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 76.2
Hma1.2p1_0832F.1_g225610 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 76.2
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 76.2
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 76.2
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.0e-10 69.7 42 76.2
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 73.8
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 73.8
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 73.8
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 73.8
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 73.8
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 73.8
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 76.2
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 76.2
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 76.2
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 76.2
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 76.2
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 73.8
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.4e-10 69.3 42 73.8
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 1.8e-10 68.9 42 73.8
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 1.8e-10 68.9 42 76.2
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 1.8e-10 68.9 42 73.8
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 1.8e-10 68.9 42 73.8
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.8e-10 68.9 42 73.8
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 2.3e-10 68.6 42 71.4
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 2.3e-10 68.6 42 71.4
Nitab4.5_0002366g0060 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.3e-10 68.6 42 76.2
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 3.1e-10 68.2 42 71.4
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 3.1e-10 68.2 42 71.4
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 3.1e-10 68.2 42 73.8
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 4.0e-10 67.8 42 73.8
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 4.0e-10 67.8 42 71.4
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 5.2e-10 67.4 42 73.8
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 5.2e-10 67.4 42 73.8
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 5.2e-10 67.4 42 73.8
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 8.9e-10 66.6 42 71.4
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 8.9e-10 66.6 42 71.4
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 8.9e-10 66.6 42 71.4
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 8.9e-10 66.6 42 73.8
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 8.9e-10 66.6 42 73.8
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 8.9e-10 66.6 42 71.4
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 1.2e-09 66.2 42 73.8
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.2e-09 66.2 42 69.0
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.2e-09 66.2 42 73.8
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 1.2e-09 66.2 42 73.8
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 1.2e-09 66.2 42 71.4
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 1.5e-09 65.9 42 73.8
Nitab4.5_0000465g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.5e-09 65.9 42 73.8
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 2.0e-09 65.5 42 73.8
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.0e-09 65.5 42 71.4
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 2.0e-09 65.5 42 73.8
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 2.0e-09 65.5 42 71.4
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 2.6e-09 65.1 42 73.8
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.6e-09 65.1 42 73.8
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.6e-09 65.1 42 71.4
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 2.6e-09 65.1 42 71.4
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 3.4e-09 64.7 42 71.4
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 3.4e-09 64.7 50 62.0
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 3.4e-09 64.7 42 71.4
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 3.4e-09 64.7 42 69.0
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 4.4e-09 64.3 42 69.0
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.4e-09 64.3 42 73.8
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 4.4e-09 64.3 42 73.8
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 4.4e-09 64.3 41 70.7
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 4.4e-09 64.3 42 69.0
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 4.4e-09 64.3 42 69.0
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 5.8e-09 63.9 42 69.0
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 5.8e-09 63.9 41 75.6
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 7.5e-09 63.5 42 66.7
vmacro05504 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 7.5e-09 63.5 39 71.8
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 9.8e-09 63.2 42 71.4
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 9.8e-09 63.2 53 60.4
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.3e-08 62.8 41 68.3
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.7e-08 62.4 42 69.0
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 1.7e-08 62.4 41 68.3
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 1.7e-08 62.4 39 74.4
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 2.9e-08 61.6 42 66.7
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 8.3e-08 60.1 46 65.2
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 8.3e-08 60.1 50 54.0
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.1e-07 59.7 42 69.0
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.1e-07 59.7 42 69.0
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 1.1e-07 59.7 41 68.3
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 1.9e-07 58.9 41 65.9
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.2e-07 58.2 42 61.9
GSVIVG01037949001 Vitis vinifera HOM05D002996 ORTHO05D003536 5.4e-07 57.4 42 64.3
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 7.0e-07 57.0 39 64.1
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 1.2e-06 56.2 42 64.3
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.2e-06 56.2 42 59.5
CDE11G1125 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.0e-06 55.5 41 65.9
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 2.0e-06 55.5 43 53.5
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 2.0e-06 55.5 41 65.9
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.7e-06 55.1 41 65.9
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.7e-06 55.1 39 64.1
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 2.7e-06 55.1 39 64.1
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 2.7e-06 55.1 39 64.1
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 4.6e-06 54.3 41 56.1


User provided reference genes

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