Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g056830.3 Solanum lycopersicum HOM05D000492 ORTHO05D022076 1.1e-28 129.8 92 100.0
Sopen01g025910 Solanum pennellii HOM05D000492 ORTHO05D000499 7.5e-22 107.1 53 98.1
PGSC0003DMG400021498 Solanum tuberosum HOM05D000492 ORTHO05D022076 2.8e-21 105.1 53 92.5
Peaxi162Scf00060g01215 Petunia axillaris HOM05D000492 ORTHO05D000499 8.5e-18 93.6 53 81.1
Nitab4.5_0006454g0030 Nicotiana tabacum HOM05D000492 ORTHO05D000499 5.5e-17 90.9 53 81.1
Nitab4.5_0008653g0040 Nicotiana tabacum HOM05D000492 ORTHO05D022076 2.8e-16 88.6 53 79.2
Nitab4.5_0004274g0010 Nicotiana tabacum HOM05D000492 ORTHO05D000499 2.3e-15 85.5 50 78.0
CAN.G128.156 Capsicum annuum HOM05D000492 ORTHO05D000499 1.5e-14 82.8 53 75.5
Solyc10g081580.3 Solanum lycopersicum HOM05D000492 ORTHO05D000499 2.6e-14 82.0 53 75.5
Sopen10g032090 Solanum pennellii HOM05D000492 ORTHO05D000499 2.6e-14 82.0 53 75.5
PGSC0003DMG400028128 Solanum tuberosum HOM05D000492 ORTHO05D000499 2.6e-14 82.0 53 75.5
Dinv11920 Davidia involucrata HOM05D000492 ORTHO05D000499 3.8e-10 68.2 53 66.0
TAR258G0001 Trochodendron aralioides HOM05D000492 ORTHO05D000499 6.6e-10 67.4 53 64.2
TAR369G0589 Trochodendron aralioides HOM05D000492 ORTHO05D000499 6.6e-10 67.4 53 64.2
TWI60G1190 Tripterygium wilfordii HOM05D000492 ORTHO05D000499 8.6e-10 67.0 53 64.2
CiPaw.10G126600 Carya illinoinensis HOM05D000492 ORTHO05D000499 1.9e-09 65.9 53 62.3
TWI32G0387 Tripterygium wilfordii HOM05D000492 ORTHO05D000499 2.5e-09 65.5 53 62.3
Cc06_g07160 Coffea canephora HOM05D000492 ORTHO05D022076 3.3e-09 65.1 53 60.4
Dinv25094 Davidia involucrata HOM05D000492 ORTHO05D000499 5.6e-09 64.3 53 62.3
Cpa.g.sc51.144 Carica papaya HOM05D000492 ORTHO05D000499 7.3e-09 63.9 53 62.3
vmacro07537 Vaccinium macrocarpon HOM05D000492 ORTHO05D000499 9.5e-09 63.5 50 64.0
MBI17_g38208_MAGBIO Magnolia biondii HOM05D000492 ORTHO05D000499 1.2e-08 63.2 53 62.3
Rhsim03G0055600 Rhododendron simsii HOM05D000492 ORTHO05D000499 2.1e-08 62.4 53 64.2
Rhsim03G0056600 Rhododendron simsii HOM05D000492 ORTHO05D000499 2.1e-08 62.4 53 64.2
MSTRG.10425 Avicennia marina HOM05D000492 ORTHO05D000499 2.8e-08 62.0 53 60.4
Eucgr.A02112 Eucalyptus grandis HOM05D000492 ORTHO05D000499 2.8e-08 62.0 53 60.4
MD14G1004100 Malus domestica HOM05D000492 ORTHO05D000499 2.8e-08 62.0 53 58.5
CSS0014651 Camellia sinensis var. sinensis HOM05D000492 ORTHO05D000499 6.1e-08 60.8 53 64.2
CANSAT78G1369 Cannabis sativa HOM05D000492 ORTHO05D000499 8.0e-08 60.5 53 56.6
PGR042G1856 Punica granatum HOM05D000492 ORTHO05D000499 8.0e-08 60.5 53 56.6
HPP92_017664 Vanilla planifolia HOM05D000492 ORTHO05D000499 8.0e-08 60.5 53 58.5
Actinidia03953 Actinidia chinensis HOM05D000492 ORTHO05D000499 1.0e-07 60.1 53 64.2
ECA248G3176 Erigeron canadensis HOM05D000492 ORTHO05D000499 1.0e-07 60.1 53 60.4
HanXRQChr01g0026321 Helianthus annuus HOM05D000492 ORTHO05D000499 1.0e-07 60.1 53 60.4
HanXRQChr11g0347901 Helianthus annuus HOM05D000492 ORTHO05D000499 1.0e-07 60.1 53 60.4
FAN23G0709 Fragaria x ananassa HOM05D000492 ORTHO05D000499 1.4e-07 59.7 53 58.5
QL07p018899 Quercus lobata HOM05D000492 ORTHO05D000499 1.4e-07 59.7 53 58.5
RcHm_v2.0_Chr3g0496741 Rosa chinensis HOM05D000492 ORTHO05D000499 1.8e-07 59.3 53 58.5
Nn5g27630 Nelumbo nucifera HOM05D000492 ORTHO05D000499 2.3e-07 58.9 53 58.5
Sc01g0005160 Simmondsia chinensis HOM05D000492 ORTHO05D000499 2.3e-07 58.9 53 58.5
Oeu063099.1 Olea europaea HOM05D000495 ORTHO05D000499 3.0e-07 58.5 43 65.1
Prupe.7G006600 Prunus persica HOM05D000492 ORTHO05D000499 3.0e-07 58.5 53 56.6
Sed0018996 Sechium edule HOM05D000492 ORTHO05D000499 4.0e-07 58.2 53 58.5
ATR0697G086 Amborella trichopoda HOM05D000492 ORTHO05D000499 5.2e-07 57.8 53 56.6
MD12G1006500 Malus domestica HOM05D000492 ORTHO05D000499 5.2e-07 57.8 53 58.5
HPP92_015648 Vanilla planifolia HOM05D000492 ORTHO05D000499 6.8e-07 57.4 53 54.7
MSTRG.26566 Avicennia marina HOM05D000492 ORTHO05D000499 8.9e-07 57.0 53 54.7
Haze_20482 Corylus avellana HOM05D000492 ORTHO05D000499 8.9e-07 57.0 53 60.4
SGA_v2.0_scaffold392G50666 Striga asiatica HOM05D000492 ORTHO05D000499 1.2e-06 56.6 51 49.0
GSVIVG01022480001 Vitis vinifera HOM05D000492 ORTHO05D000499 1.2e-06 56.6 53 56.6
THA.LOC104805769 Tarenaya hassleriana HOM05D000492 ORTHO05D000499 1.5e-06 56.2 53 54.7
Duzib177G0386 Durio zibethinus HOM05D000492 ORTHO05D000499 2.6e-06 55.5 53 56.6
Migut.L01861 Erythranthe guttata HOM05D000492 ORTHO05D000499 2.6e-06 55.5 53 52.8
FAN26G0245 Fragaria x ananassa HOM05D000492 ORTHO05D000499 2.6e-06 55.5 45 57.8
Lsat_1_v5_gn_9_39661 Lactuca sativa HOM05D000492 ORTHO05D000499 2.6e-06 55.5 53 56.6
SGA_v2.0_scaffold41G15784 Striga asiatica HOM05D000492 ORTHO05D000499 2.6e-06 55.5 44 56.8
ClCG10G013540 Citrullus lanatus HOM05D000492 ORTHO05D000499 4.4e-06 54.7 53 56.6
Nitab4.5_0000117g0130 Nicotiana tabacum HOM05D000492 ORTHO05D000499 4.4e-06 54.7 27 92.6
Thecc.05G247500 Theobroma cacao HOM05D000492 ORTHO05D000499 4.4e-06 54.7 53 56.6
CDE10G0198 Ceratophyllum demersum HOM05D000492 ORTHO05D000499 5.7e-06 54.3 53 52.8
COL.COLO4_32993 Corchorus olitorius HOM05D000492 ORTHO05D000499 5.7e-06 54.3 53 56.6
FvH4_1g28350 Fragaria vesca HOM05D000492 ORTHO05D000499 5.7e-06 54.3 56 55.4
FAN19G2281 Fragaria x ananassa HOM05D000492 ORTHO05D000499 5.7e-06 54.3 56 55.4
Lj2C418T15 Lonicera japonica HOM05D000492 ORTHO05D000499 5.7e-06 54.3 45 64.4
SGA_v2.0_scaffold112G31668 Striga asiatica HOM05D000492 ORTHO05D000499 5.7e-06 54.3 53 52.8
Ciclev10021315m.g Citrus clementina HOM05D000492 ORTHO05D000499 7.5e-06 53.9 53 54.7
Nn6g32373 Nelumbo nucifera HOM05D000492 ORTHO05D000499 9.8e-06 53.5 53 49.1
TAR633G0022 Trochodendron aralioides HOM05D000492 ORTHO05D000499 9.8e-06 53.5 53 54.7
unitig_85.g27221 Utricularia gibba HOM05D000492 ORTHO05D000499 9.8e-06 53.5 53 52.8


User provided reference genes

Program Settings