Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 4.0e-76 288.1 157 100.0
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 7.4e-70 267.3 157 93.6
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 6.2e-69 264.2 160 94.4
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 1.7e-58 229.6 159 82.4
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 3.2e-57 225.3 160 84.4
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 9.3e-57 223.8 160 83.1
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 1.6e-48 196.4 161 76.4
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 1.2e-43 180.3 157 68.8
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 5.0e-42 174.9 158 67.1
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 2.3e-39 166.0 161 65.2
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 2.0e-38 162.9 156 65.4
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 2.4e-36 156.0 159 63.5
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.2e-35 153.7 167 61.1
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 2.2e-34 149.4 158 60.8
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 2.9e-34 149.1 159 62.9
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 3.8e-34 148.7 159 59.7
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 3.8e-34 148.7 159 59.7
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 6.5e-34 147.9 170 60.0
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 1.1e-33 147.1 160 61.9
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 1.9e-33 146.4 157 60.5
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 4.2e-33 145.2 160 61.9
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 9.4e-33 144.1 159 61.6
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 1.2e-32 143.7 139 66.9
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 2.1e-32 142.9 160 61.9
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 2.1e-32 142.9 159 57.9
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 4.7e-32 141.7 142 62.7
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 4.7e-32 141.7 156 60.3
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 4.7e-32 141.7 142 62.7
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 8.0e-32 141.0 137 62.8
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 8.0e-32 141.0 141 66.0
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.0e-32 141.0 156 59.6
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.4e-31 140.2 139 63.3
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 1.8e-31 139.8 157 59.2
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.8e-31 139.8 157 58.0
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.8e-31 139.8 158 58.2
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 2.3e-31 139.4 140 65.0
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 2.3e-31 139.4 140 65.0
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 3.0e-31 139.0 164 57.9
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 4.0e-31 138.7 140 65.0
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 4.0e-31 138.7 165 58.2
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 4.0e-31 138.7 156 59.6
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 5.2e-31 138.3 140 62.9
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 5.2e-31 138.3 135 65.2
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 8.8e-31 137.5 161 60.2
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 8.8e-31 137.5 141 63.8
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 8.8e-31 137.5 161 60.2
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 8.8e-31 137.5 141 64.5
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 8.8e-31 137.5 161 60.2
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 8.8e-31 137.5 141 63.8
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 8.8e-31 137.5 139 63.3
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.5e-30 136.7 139 64.7
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.5e-30 136.7 140 64.3
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 2.0e-30 136.3 160 57.5
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 2.0e-30 136.3 155 59.4
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.6e-30 136.0 160 60.6
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.3e-30 135.6 160 60.6
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 5.7e-30 134.8 160 60.0
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 5.7e-30 134.8 160 60.0
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 7.5e-30 134.4 140 62.1
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 7.5e-30 134.4 139 61.9
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.7e-29 133.3 141 63.1
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 2.2e-29 132.9 160 58.8
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 2.2e-29 132.9 140 60.7
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.2e-29 132.9 157 59.2
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 2.2e-29 132.9 155 56.8
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 4.8e-29 131.7 156 57.7
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 4.8e-29 131.7 157 57.3
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 1.1e-28 130.6 140 60.0
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 1.4e-28 130.2 156 58.3
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 1.8e-28 129.8 108 67.6
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 4.1e-28 128.6 157 59.9
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 5.3e-28 128.3 149 59.1
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 9.1e-28 127.5 155 56.1
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 1.6e-27 126.7 158 53.2
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 1.6e-27 126.7 137 59.9
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.7e-27 125.9 157 56.7
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 3.5e-27 125.6 156 57.1
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 3.5e-27 125.6 159 53.5
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 1.3e-26 123.6 193 48.2
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 2.2e-26 122.9 155 56.8
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 2.2e-26 122.9 115 64.3
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 2.9e-26 122.5 137 58.4
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 5.0e-26 121.7 137 58.4
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 5.0e-26 121.7 139 60.4
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 6.5e-26 121.3 154 55.2
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 6.5e-26 121.3 154 55.2
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 8.5e-26 120.9 167 53.9
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 1.5e-25 120.2 165 53.3
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 2.5e-25 119.4 160 53.8
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 5.5e-25 118.2 134 61.2
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 2.7e-24 115.9 155 54.8
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 4.7e-24 115.2 155 54.2
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.0e-23 114.0 154 51.9
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 5.2e-23 111.7 158 51.9
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 8.8e-23 110.9 139 56.8
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.3e-21 107.1 154 51.3
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.7e-21 106.7 165 50.9
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 3.7e-21 105.5 139 54.7
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 3.7e-21 105.5 135 54.8
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 4.8e-21 105.1 77 72.7
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 8.3e-21 104.4 141 53.2
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 8.3e-21 104.4 86 68.6
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 2.4e-20 102.8 139 51.1
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 3.1e-20 102.4 154 50.0
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 7.0e-20 101.3 136 50.0
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 2.0e-19 99.8 77 67.5
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 4.5e-19 98.6 77 70.1
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 6.5e-18 94.7 93 60.2
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 1.1e-17 94.0 137 46.7
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 2.5e-17 92.8 138 52.2
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.2e-16 90.5 59 81.4
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 1.2e-16 90.5 132 51.5
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 3.6e-16 89.0 143 50.3
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 1.4e-15 87.0 66 71.2
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.0e-15 85.9 89 59.6
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 3.0e-15 85.9 89 59.6
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 6.8e-15 84.7 68 69.1
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 1.2e-14 84.0 126 50.0
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 9.8e-14 80.9 165 40.6
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 3.1e-12 75.9 128 43.8
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 7.0e-12 74.7 107 49.5
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 1.0e-10 70.9 107 45.8
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 3.3e-09 65.9 135 43.7
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.2e-08 63.9 139 41.0
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 1.6e-08 63.5 137 42.3
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 2.1e-08 63.2 115 45.2
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 6.8e-07 58.2 62 56.5
Dinv40659 Davidia involucrata HOM05D067992 ORTHO05D037981 5.8e-06 55.1 59 55.9


User provided reference genes

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