Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g056410.1 Solanum lycopersicum HOM05D002585 ORTHO05D023007 1.4e-41 172.6 86 100.0
PGSC0003DMG402009595 Solanum tuberosum HOM05D002585 ORTHO05D023007 1.0e-20 103.2 62 82.3
PGSC0003DMG400019013 Solanum tuberosum HOM05D002585 ORTHO05D023007 8.5e-20 100.1 59 79.7
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 2.7e-18 95.1 57 80.7
Sopen01g025490 Solanum pennellii HOM05D002585 ORTHO05D023007 6.1e-18 94.0 54 81.5
Solyc01g056440.1 Solanum lycopersicum HOM05D002585 ORTHO05D023007 1.5e-16 89.4 77 64.9
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.7e-15 85.9 57 71.9
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 7.0e-14 80.5 71 56.3
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.2e-13 79.7 57 64.9
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 2.0e-13 79.0 65 61.5
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 2.7e-13 78.6 65 60.0
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 4.5e-13 77.8 72 59.7
Nitab4.5_0003945g0170 Nicotiana tabacum HOM05D002585 ORTHO05D023007 7.7e-13 77.0 55 67.3
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.7e-12 75.9 72 56.9
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 1.7e-12 75.9 72 56.9
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 2.9e-12 75.1 72 58.3
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 2.9e-12 75.1 72 58.3
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.8e-12 74.7 72 55.6
CAN.G541.45 Capsicum annuum HOM05D002585 ORTHO05D002917 5.0e-12 74.3 72 58.3
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 1.9e-11 72.4 71 59.2
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.5e-11 72.0 55 65.5
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 8.0e-10 67.0 75 52.0
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.3e-09 65.5 75 50.7
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 4.0e-09 64.7 68 51.5
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 5.7e-08 60.8 52 55.8
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 9.8e-08 60.1 53 54.7
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 1.3e-07 59.7 48 58.3
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 1.7e-07 59.3 55 52.7
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 1.7e-07 59.3 48 58.3
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 2.2e-07 58.9 48 58.3
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 2.2e-07 58.9 44 63.6
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 2.8e-07 58.5 62 53.2
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 3.7e-07 58.2 72 45.8
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 3.7e-07 58.2 74 47.3
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 3.7e-07 58.2 73 49.3
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 8.3e-07 57.0 50 56.0
CiPaw.09G003100 Carya illinoinensis HOM05D002585 ORTHO05D002917 8.3e-07 57.0 50 56.0
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 1.1e-06 56.6 48 54.2
Haze_19443 Corylus avellana HOM05D002585 ORTHO05D002917 1.1e-06 56.6 50 56.0
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 1.1e-06 56.6 51 54.9
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.1e-06 56.6 60 48.3
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.1e-06 56.6 60 48.3
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.4e-06 56.2 54 50.0
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 1.4e-06 56.2 57 49.1
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.4e-06 55.5 54 50.0
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 2.4e-06 55.5 52 51.9
Solyc06g011320.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.4e-06 55.5 55 54.5
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 3.1e-06 55.1 57 45.6
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 3.1e-06 55.1 59 52.5
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 3.1e-06 55.1 50 48.0
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.1e-06 55.1 52 50.0
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 3.1e-06 55.1 54 48.1
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 3.1e-06 55.1 48 52.1
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.1e-06 55.1 62 51.6
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 4.1e-06 54.7 69 42.0
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 4.1e-06 54.7 54 50.0
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 4.1e-06 54.7 50 52.0
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 4.1e-06 54.7 54 50.0
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 4.1e-06 54.7 50 52.0
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 4.1e-06 54.7 48 52.1
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 5.4e-06 54.3 60 48.3
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 5.4e-06 54.3 54 48.1
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 5.4e-06 54.3 64 46.9
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 7.0e-06 53.9 54 48.1
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 7.0e-06 53.9 62 50.0
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 9.2e-06 53.5 67 44.8
HanXRQChr05g0144541 Helianthus annuus HOM05D002585 ORTHO05D002917 9.2e-06 53.5 44 59.1
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 9.2e-06 53.5 47 48.9


User provided reference genes

Program Settings