Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g056390.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.4e-54 216.1 110 100.0
Solyc01g056430.2 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.1e-39 165.6 147 64.6
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 5.4e-35 151.0 158 57.6
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 9.2e-35 150.2 133 66.2
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 1.2e-34 149.8 132 65.2
Sopen01g025510 Solanum pennellii HOM05D002585 ORTHO05D002917 1.6e-34 149.4 108 76.9
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 5.6e-32 141.0 159 52.2
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 9.5e-32 140.2 178 49.4
PGSC0003DMG400019014 Solanum tuberosum HOM05D002585 ORTHO05D002917 8.9e-30 133.7 76 92.1
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 8.3e-28 127.1 140 50.7
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.1e-27 126.7 176 44.9
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 1.1e-27 126.7 159 47.8
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 7.1e-27 124.0 176 44.3
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 7.1e-27 124.0 170 45.9
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 7.8e-26 120.6 164 46.3
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 1.7e-25 119.4 175 42.3
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 5.1e-25 117.9 169 45.0
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 6.6e-25 117.5 166 45.2
Peaxi162Scf00780g01013 Petunia axillaris HOM05D002585 ORTHO05D002917 2.8e-23 112.1 75 76.0
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.6e-23 111.7 162 43.8
Nitab4.5_0008230g0010 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.4e-22 109.8 76 73.7
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.4e-22 109.0 122 50.0
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 8.9e-22 107.1 179 39.7
Peaxi162Scf00247g00111 Petunia axillaris HOM05D002585 ORTHO05D002917 1.2e-21 106.7 76 73.7
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 2.2e-20 102.4 207 36.2
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 3.8e-20 101.7 169 37.9
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 6.4e-20 100.9 165 37.6
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 6.4e-20 100.9 165 37.6
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 6.4e-20 100.9 165 37.6
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 6.4e-20 100.9 165 37.6
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 2.4e-19 99.0 196 34.2
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 3.2e-19 98.6 173 37.0
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 3.2e-19 98.6 173 35.8
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 3.2e-19 98.6 172 36.6
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 3.2e-19 98.6 201 35.3
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 4.1e-19 98.2 172 36.0
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 5.4e-19 97.8 172 36.0
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 5.4e-19 97.8 173 35.8
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 1.6e-18 96.3 161 39.1
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 1.6e-18 96.3 155 39.4
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 1.6e-18 96.3 164 38.4
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 2.1e-18 95.9 172 34.9
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 2.1e-18 95.9 175 36.6
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 2.7e-18 95.5 152 38.8
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 2.7e-18 95.5 172 36.6
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 3.5e-18 95.1 173 35.8
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 4.6e-18 94.7 162 37.0
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 6.0e-18 94.4 172 35.5
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 7.8e-18 94.0 172 33.7
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 7.8e-18 94.0 170 35.3
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 1.0e-17 93.6 169 37.9
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.0e-17 93.6 168 37.5
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 1.3e-17 93.2 179 34.1
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 1.3e-17 93.2 161 39.1
Nitab4.5_0003945g0140 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.7e-17 92.8 66 74.2
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 1.7e-17 92.8 172 36.0
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 1.7e-17 92.8 172 36.0
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 2.3e-17 92.4 179 33.0
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 5.1e-17 91.3 172 36.6
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 5.1e-17 91.3 174 37.4
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 5.1e-17 91.3 173 35.3
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 5.1e-17 91.3 172 35.5
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 6.6e-17 90.9 172 34.9
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.6e-17 90.9 171 35.7
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 6.6e-17 90.9 171 35.7
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 8.7e-17 90.5 172 34.9
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 8.7e-17 90.5 174 36.2
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 1.1e-16 90.1 155 35.5
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 1.9e-16 89.4 172 34.3
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 1.9e-16 89.4 172 34.9
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.9e-16 89.4 173 35.3
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 2.5e-16 89.0 147 36.7
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 2.5e-16 89.0 179 33.0
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 2.5e-16 89.0 172 35.5
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 2.5e-16 89.0 173 35.8
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 2.5e-16 89.0 172 34.3
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 2.5e-16 89.0 184 32.1
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 3.3e-16 88.6 161 35.4
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 3.3e-16 88.6 148 37.8
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 3.3e-16 88.6 148 37.8
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 3.3e-16 88.6 148 37.8
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 3.3e-16 88.6 172 34.9
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 3.3e-16 88.6 170 35.3
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 3.3e-16 88.6 172 33.7
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 3.3e-16 88.6 172 34.3
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 4.3e-16 88.2 172 34.3
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 5.6e-16 87.8 152 36.2
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 5.6e-16 87.8 172 33.7
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 7.3e-16 87.4 184 35.3
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 7.3e-16 87.4 179 33.5
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 1.2e-15 86.7 172 33.7
vmacro07324 Vaccinium macrocarpon HOM05D002585 ORTHO05D002917 1.2e-15 86.7 128 35.2
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 1.6e-15 86.3 186 31.7
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 2.1e-15 85.9 164 34.8
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 2.1e-15 85.9 146 37.0
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 2.1e-15 85.9 175 30.3
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 2.8e-15 85.5 183 32.8
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 3.6e-15 85.1 159 35.2
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 3.6e-15 85.1 158 35.4
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 4.7e-15 84.7 168 32.7
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 1.4e-14 83.2 168 32.1
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 3.1e-14 82.0 76 52.6
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 3.1e-14 82.0 162 34.0
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 3.1e-14 82.0 171 30.4
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 4.0e-14 81.6 76 53.9
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 5.2e-14 81.3 76 52.6
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 5.2e-14 81.3 172 31.4
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 9.0e-14 80.5 172 32.0
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 9.0e-14 80.5 171 29.8
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.2e-13 80.1 172 29.7
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 1.5e-13 79.7 172 32.0
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 2.0e-13 79.3 172 30.2
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 2.6e-13 79.0 172 31.4
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 2.6e-13 79.0 173 31.8
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 3.4e-13 78.6 172 32.0
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 3.4e-13 78.6 180 31.7
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 4.4e-13 78.2 123 39.8
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 4.4e-13 78.2 175 31.4
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 5.8e-13 77.8 80 51.2
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 5.8e-13 77.8 172 31.4
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 9.9e-13 77.0 173 34.1
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 1.3e-12 76.6 172 32.6
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 1.7e-12 76.3 80 50.0
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 1.7e-12 76.3 76 51.3
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 1.7e-12 76.3 164 32.9
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 1.7e-12 76.3 173 31.2
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 1.7e-12 76.3 172 32.0
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 2.2e-12 75.9 173 30.6
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 2.2e-12 75.9 172 30.8
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 2.2e-12 75.9 168 28.6
FAN02G4184 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.8e-12 75.1 76 52.6
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 3.8e-12 75.1 76 48.7
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 4.9e-12 74.7 172 30.2
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 6.4e-12 74.3 76 47.4
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 8.4e-12 73.9 179 29.6
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 5.4e-11 71.2 76 48.7
Lalb_Chr02g0155491 Lupinus albus HOM05D002585 ORTHO05D002917 2.1e-10 69.3 76 46.1
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 7.8e-10 67.4 181 27.6
Lalb_Chr21g0315151 Lupinus albus HOM05D002585 ORTHO05D002917 1.0e-09 67.0 76 44.7
unitig_0.g678 Utricularia gibba HOM05D002585 ORTHO05D002917 1.7e-09 66.2 96 40.6
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 6.6e-09 64.3 172 27.3
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 1.9e-08 62.8 76 42.1
AUR62041382 Chenopodium quinoa HOM05D002585 ORTHO05D002917 5.6e-08 61.2 76 42.1
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 1.3e-07 60.1 177 26.0
HanXRQChr05g0144531 Helianthus annuus HOM05D002585 ORTHO05D002917 1.6e-07 59.7 76 42.1
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 1.6e-07 59.7 191 25.7
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.1e-07 59.3 172 26.7
Nitab4.5_0003945g0160 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.8e-07 58.9 33 78.8
Nitab4.5_0008230g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.6e-07 58.5 89 39.3
Peaxi162Scf00247g00105 Petunia axillaris HOM05D002585 ORTHO05D002917 1.1e-06 57.0 32 78.1
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 4.0e-06 55.1 177 24.9
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 5.3e-06 54.7 30 80.0
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 9.0e-06 53.9 76 39.5


User provided reference genes

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