Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 3.4e-175 618.2 316 100.0
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 3.2e-173 611.7 316 98.7
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 6.3e-153 544.3 316 89.2
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 6.5e-150 534.3 315 87.6
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 7.2e-149 530.8 315 86.7
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.0e-135 486.1 256 96.5
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 5.9e-135 484.6 256 96.1
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.2e-95 354.0 318 59.1
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 6.0e-95 351.7 314 59.9
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 7.3e-93 344.7 322 56.8
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.6e-92 342.4 318 56.9
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 4.4e-90 335.5 320 55.3
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 9.9e-90 334.3 317 56.8
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 8.4e-89 331.3 318 55.0
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 2.4e-88 329.7 321 56.1
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 5.4e-88 328.6 321 55.8
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.1e-88 328.2 317 54.3
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.1e-87 326.6 293 56.7
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.7e-87 326.2 300 57.3
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 2.7e-87 326.2 314 54.8
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 3.5e-87 325.9 277 61.7
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 3.5e-87 325.9 316 53.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.6e-87 325.5 329 52.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.3e-86 323.9 320 54.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.9e-86 322.4 317 50.8
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.5e-85 320.5 317 50.8
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.3e-85 319.3 272 61.8
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.6e-84 317.0 319 55.5
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.6e-84 317.0 317 54.9
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 6.2e-84 315.1 311 52.1
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 6.2e-84 315.1 317 50.2
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.4e-83 313.9 315 50.2
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.8e-83 313.5 319 54.5
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.4e-83 313.2 321 53.0
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.1e-83 312.8 321 52.0
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.3e-83 312.0 314 53.5
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 6.9e-83 311.6 313 53.7
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.5e-82 310.5 317 51.7
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.5e-82 310.5 317 52.1
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 9.9e-82 307.8 322 50.9
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 4.9e-81 305.4 321 52.3
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.9e-81 305.4 321 51.7
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 1.4e-80 303.9 315 53.7
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.9e-80 303.5 322 50.3
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 4.2e-80 302.4 320 51.2
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 4.2e-80 302.4 318 51.6
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 9.3e-80 301.2 321 47.7
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 9.3e-80 301.2 318 52.2
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.2e-79 300.8 319 48.9
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.6e-79 300.4 299 53.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.6e-79 300.4 320 50.3
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.1e-79 300.1 329 49.2
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 6.0e-79 298.5 323 50.5
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.0e-78 296.2 310 51.0
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 5.1e-78 295.4 318 47.8
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 3.3e-77 292.7 323 50.8
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 7.3e-77 291.6 324 48.8
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 9.6e-77 291.2 367 46.6
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 9.6e-77 291.2 311 53.1
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 2.8e-76 289.7 318 48.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 3.6e-76 289.3 315 49.2
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 6.2e-76 288.5 416 41.6
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.4e-75 287.3 323 49.5
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.4e-75 287.3 317 52.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 1.8e-75 287.0 322 50.6
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 2.4e-75 286.6 319 51.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 5.3e-75 285.4 315 52.4
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 9.0e-75 284.6 164 89.6
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 1.2e-74 284.3 299 50.8
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.5e-74 283.9 322 49.1
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 2.6e-74 283.1 294 55.1
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 3.4e-74 282.7 318 46.9
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 4.5e-74 282.3 322 48.4
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 9.9e-74 281.2 319 47.6
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 9.9e-74 281.2 320 48.1
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.3e-73 280.8 328 48.8
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.7e-73 280.4 322 49.1
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 2.2e-73 280.0 294 54.8
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.9e-73 279.6 315 49.5
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 2.9e-73 279.6 316 48.1
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 4.9e-73 278.9 322 50.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.9e-72 276.9 319 47.3
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 1.9e-72 276.9 321 47.0
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 1.9e-72 276.9 321 47.0
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 1.9e-72 276.9 321 47.0
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.9e-72 276.9 321 48.6
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 3.2e-72 276.2 316 48.7
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 5.4e-72 275.4 321 47.7
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 7.1e-72 275.0 324 48.5
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 9.3e-72 274.6 315 48.6
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.6e-71 273.9 322 48.1
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.6e-71 273.9 322 48.1
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.1e-71 273.5 321 47.4
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.1e-71 273.5 321 48.6
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 2.7e-71 273.1 316 47.8
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.5e-71 272.7 315 47.6
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 3.5e-71 272.7 262 50.0
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.5e-71 272.7 314 48.1
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 4.6e-71 272.3 322 49.4
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-70 270.8 322 49.1
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-70 270.8 323 47.4
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.3e-70 270.8 323 47.4
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.3e-70 270.8 323 47.4
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 1.8e-70 270.4 321 46.4
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 1.8e-70 270.4 321 46.4
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.3e-70 270.0 319 46.4
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.3e-70 270.0 312 46.8
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.0e-70 269.6 317 48.3
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 3.0e-70 269.6 316 48.1
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 3.9e-70 269.2 264 52.3
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 3.9e-70 269.2 322 49.4
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 5.1e-70 268.9 323 47.4
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 6.7e-70 268.5 259 52.1
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 8.7e-70 268.1 291 50.5
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 2.5e-69 266.5 315 47.0
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.3e-69 266.2 317 47.3
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.6e-69 265.4 320 46.6
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.3e-68 264.2 320 47.5
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.8e-67 260.4 317 45.4
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 3.1e-67 259.6 319 46.4
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 6.9e-67 258.5 319 44.2
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.5e-66 257.3 259 54.4
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.5e-66 257.3 390 42.1
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 2.0e-66 256.9 321 46.4
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 2.6e-66 256.5 316 45.6
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.7e-65 253.8 322 46.0
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.2e-65 253.4 282 49.3
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.4e-64 250.8 323 45.8
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 9.3e-64 248.1 318 45.3
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.2e-63 247.7 318 44.7
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.1e-63 246.9 324 44.8
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.5e-63 246.1 318 45.3
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.5e-61 240.0 318 43.7
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 4.1e-59 232.6 323 41.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 2.8e-52 209.9 330 42.1
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.1e-51 206.5 315 39.0
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 3.1e-43 179.9 219 44.7
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 5.0e-41 172.6 251 37.8
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 2.6e-37 160.2 215 43.3
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 2.6e-37 160.2 300 31.7
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.7e-36 156.4 314 33.8
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 7.0e-35 152.1 165 47.9
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 2.6e-34 150.2 293 33.4
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.9e-32 144.1 171 46.8
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.8e-30 137.5 181 39.8
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.1e-27 128.3 315 32.7
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.5e-24 117.9 134 49.3
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.2e-24 116.3 134 48.5
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.7e-20 103.2 118 49.2
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 2.9e-17 93.6 104 49.0
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.5e-16 89.4 88 51.1
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.1e-15 85.9 90 52.2
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.1e-15 85.9 90 52.2
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 6.8e-14 82.4 141 39.0
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.5e-13 79.0 102 45.1
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 4.9e-12 76.3 75 45.3
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.4e-11 74.7 70 47.1
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 1.4e-11 74.7 70 47.1
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 2.7e-10 70.5 86 41.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 3.6e-07 60.1 83 34.9


User provided reference genes

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