Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.9e-133 479.2 247 100.0
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 1.8e-131 472.6 244 99.6
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 2.6e-106 389.0 246 84.1
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 4.8e-100 368.2 224 85.3
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 3.1e-83 312.4 168 94.0
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 3.8e-81 305.4 225 72.9
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 2.8e-79 299.3 253 63.6
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 8.9e-78 294.3 201 72.1
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 3.4e-77 292.4 226 64.6
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 2.9e-76 289.3 249 60.6
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.8e-75 286.6 260 61.5
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 7.0e-75 284.6 241 61.8
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 2.9e-73 279.3 199 67.3
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 3.7e-68 262.3 258 54.7
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 5.4e-67 258.5 200 66.0
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 7.0e-67 258.1 200 66.0
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 2.0e-66 256.5 179 78.2
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 2.7e-66 256.1 168 75.6
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 7.8e-66 254.6 248 54.8
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.8e-62 243.4 202 60.9
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 2.3e-62 243.0 174 69.5
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 5.2e-62 241.9 241 56.8
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 1.5e-61 240.4 168 70.8
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.3e-60 237.3 196 60.2
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.7e-60 236.9 249 52.6
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 4.9e-60 235.3 247 53.8
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 1.6e-58 230.3 195 60.5
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.1e-58 229.9 224 53.6
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 2.7e-58 229.6 223 53.8
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 4.6e-58 228.8 224 53.1
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.0e-57 227.6 240 52.9
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 1.0e-57 227.6 247 50.6
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.5e-56 223.8 235 49.8
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 1.5e-56 223.8 227 51.1
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 1.9e-56 223.4 248 48.4
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 2.5e-56 223.0 227 51.1
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 2.5e-56 223.0 216 52.8
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 3.3e-56 222.6 200 54.0
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 5.6e-56 221.9 226 50.9
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 7.3e-56 221.5 228 52.2
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 7.3e-56 221.5 233 49.8
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 7.3e-56 221.5 233 49.8
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 7.3e-56 221.5 179 61.5
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 9.5e-56 221.1 197 54.8
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 9.5e-56 221.1 197 54.8
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 9.5e-56 221.1 174 74.1
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 9.5e-56 221.1 250 49.2
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 1.6e-55 220.3 197 54.3
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 1.6e-55 220.3 197 55.3
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 4.7e-55 218.8 237 47.7
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 6.2e-55 218.4 244 48.8
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 6.2e-55 218.4 234 50.9
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 1.4e-54 217.2 247 47.8
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 5.2e-54 215.3 246 46.3
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 6.8e-54 214.9 226 49.1
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.2e-53 214.2 160 63.1
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.5e-53 213.8 203 57.6
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 2.0e-53 213.4 255 49.4
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 4.4e-53 212.2 226 50.0
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 1.7e-52 210.3 263 46.4
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 2.2e-52 209.9 195 53.8
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 2.2e-52 209.9 233 47.6
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 8.4e-52 208.0 201 51.2
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 1.1e-51 207.6 225 49.3
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.9e-51 206.8 242 47.9
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 1.9e-51 206.8 149 66.4
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 3.2e-51 206.1 226 48.7
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 5.4e-51 205.3 263 44.5
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 5.4e-51 205.3 237 47.3
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 3.5e-50 202.6 190 54.7
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 4.6e-50 202.2 254 44.1
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 6.0e-50 201.8 253 45.1
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 1.7e-49 200.3 237 46.0
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 3.0e-49 199.5 237 44.7
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 5.1e-49 198.7 226 46.9
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.6e-49 198.4 237 45.1
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.6e-49 198.4 266 41.4
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 2.5e-48 196.4 258 42.2
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 3.3e-48 196.1 233 45.9
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 5.6e-48 195.3 220 47.3
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 2.8e-47 193.0 323 39.0
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 6.2e-47 191.8 218 49.1
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 6.2e-47 191.8 246 41.9
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 6.2e-47 191.8 222 48.2
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 8.1e-47 191.4 190 51.6
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 4.4e-45 185.7 247 45.3
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 2.2e-44 183.3 199 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 6.4e-44 181.8 166 56.0
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 9.3e-43 177.9 243 42.0
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 7.8e-42 174.9 198 47.0
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 2.5e-40 169.9 136 61.8
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 2.5e-40 169.9 199 44.2
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 2.8e-39 166.4 202 47.0
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.0e-37 160.2 167 51.5
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 8.4e-36 154.8 353 31.2
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 1.2e-34 151.0 122 59.0
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 7.3e-32 141.7 80 86.2
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 1.7e-20 104.0 77 59.7
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 2.7e-18 96.7 234 28.6
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 6.0e-18 95.5 202 28.7
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.3e-16 89.4 184 28.8
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 2.1e-15 87.0 183 29.5
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.3e-15 85.5 111 45.0
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 8.2e-15 85.1 91 49.5
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 1.1e-14 84.7 185 30.3
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.1e-14 84.7 186 29.6
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 2.4e-14 83.6 184 29.3
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 2.4e-14 83.6 185 29.7
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.4e-14 83.6 185 29.2
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 2.4e-14 83.6 185 28.1
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 3.1e-14 83.2 183 28.4
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 3.1e-14 83.2 236 28.0
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 4.1e-14 82.8 220 28.2
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 4.1e-14 82.8 183 26.8
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 6.9e-14 82.0 229 27.9
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 9.0e-14 81.6 185 29.7
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 9.0e-14 81.6 234 26.1
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.2e-13 81.3 185 28.1
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.5e-13 80.9 183 28.4
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 2.0e-13 80.5 120 39.2
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 2.0e-13 80.5 183 28.4
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 2.6e-13 80.1 235 27.7
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.6e-13 80.1 183 28.4
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 2.6e-13 80.1 231 26.0
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 2.6e-13 80.1 185 26.5
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 2.6e-13 80.1 185 27.6
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 2.6e-13 80.1 183 27.9
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 3.4e-13 79.7 185 28.6
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 3.4e-13 79.7 212 26.9
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 4.5e-13 79.3 241 28.6
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.5e-13 79.3 231 27.3
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 4.5e-13 79.3 236 27.5
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 4.5e-13 79.3 236 27.5
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.9e-13 79.0 187 29.4
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.9e-13 79.0 187 29.4
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 7.6e-13 78.6 185 29.2
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 7.6e-13 78.6 183 27.9
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 7.6e-13 78.6 240 27.5
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 7.6e-13 78.6 185 28.6
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 1.0e-12 78.2 233 26.6
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.0e-12 78.2 230 27.8
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.3e-12 77.8 185 28.1
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 1.3e-12 77.8 219 26.0
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 1.3e-12 77.8 183 26.8
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 1.7e-12 77.4 183 26.8
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 1.7e-12 77.4 185 28.1
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 1.7e-12 77.4 183 27.3
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 2.2e-12 77.0 226 25.7
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 2.9e-12 76.6 185 26.5
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 2.9e-12 76.6 230 27.4
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 5.0e-12 75.9 236 28.4
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 5.0e-12 75.9 232 27.2
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 6.5e-12 75.5 232 27.2
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 8.4e-12 75.1 220 26.4
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 8.4e-12 75.1 242 26.0
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.9e-11 73.9 193 28.5
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 2.5e-11 73.6 185 25.9
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 5.5e-11 72.4 186 27.4
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 5.5e-11 72.4 234 25.2
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 9.3e-11 71.6 183 27.9
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 1.2e-10 71.2 184 27.2
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.3e-09 67.8 205 26.8
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 1.8e-09 67.4 253 24.1
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 3.0e-09 66.6 204 24.5
CSS0001325 Camellia sinensis var. sinensis HOM05D007418 ORTHO05D009419 6.3e-07 58.9 46 63.0
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 6.3e-07 58.9 118 33.1
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 3.1e-06 56.6 60 43.3
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 4.1e-06 56.2 53 47.2


User provided reference genes

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